Examples with PersonService org.openmrs.api.PersonService used on opensource projects

Example 1 with PersonService

use of org.openmrs.api.PersonService in project openmrs-core by openmrs.

the class MigrationHelper method importRelationships.

/**
 * Takes a list of Strings of the format RELATIONSHIP:<user last name>,<user first
 * name>,<relationship type name>,<patient identifier type name>,<identifier> so if user hfraser
 * if the cardiologist of the patient with patient_id 8039 in PIH's old emr, then:
 * RELATIONSHIP:hfraser,Cardiologist,HIV-EMRV1,8039 (the "RELATIONSHIP:" is not actually
 * necessary. Anything before and including the first : will be dropped If autoCreateUsers is
 * true, and no user exists with the given username, one will be created. If autoAddRole is
 * true, then whenever a user is auto-created, if a role exists with the same name as
 * relationshipType.name, then the user will be added to that role
 */
public static int importRelationships(Collection<String> relationships, boolean autoCreateUsers, boolean autoAddRole) {
    PatientService ps = Context.getPatientService();
    UserService us = Context.getUserService();
    PersonService personService = Context.getPersonService();
    List<Relationship> relsToAdd = new ArrayList<>();
    Random rand = new Random();
    for (String s : relationships) {
        if (s.contains(":")) {
            s = s.substring(s.indexOf(":") + 1);
        }
        String[] ss = s.split(",");
        if (ss.length < 5) {
            throw new IllegalArgumentException("The line '" + s + "' is in the wrong format");
        }
        String userLastName = ss[0];
        String userFirstName = ss[1];
        String username = (userFirstName + userLastName).replaceAll(" ", "");
        String relationshipType = ss[2];
        String identifierType = ss[3];
        String identifier = ss[4];
        User user = null;
        {
            // first try looking for non-voided users
            List<User> users = us.getUsersByName(userFirstName, userLastName, false);
            if (users.size() == 1) {
                user = users.get(0);
            } else if (users.size() > 1) {
                throw new IllegalArgumentException("Found " + users.size() + " users named '" + userLastName + ", " + userFirstName + "'");
            }
        }
        if (user == null) {
            // next try looking for voided users
            List<User> users = us.getUsersByName(userFirstName, userLastName, false);
            if (users.size() == 1) {
                user = users.get(0);
            } else if (users.size() > 1) {
                throw new IllegalArgumentException("Found " + users.size() + " voided users named '" + userLastName + ", " + userFirstName + "'");
            }
        }
        if (user == null && autoCreateUsers) {
            user = new User();
            user.setPerson(new Person());
            PersonName pn = new PersonName(userFirstName, "", userLastName);
            user.addName(pn);
            user.setUsername(username);
            // Generate a temporary password: 8-12 random characters
            String pass;
            {
                int length = rand.nextInt(4) + 8;
                char[] password = new char[length];
                for (int x = 0; x < length; x++) {
                    int randDecimalAsciiVal = rand.nextInt(93) + 33;
                    password[x] = (char) randDecimalAsciiVal;
                }
                pass = new String(password);
            }
            if (autoAddRole) {
                Role role = us.getRole(relationshipType);
                if (role != null) {
                    user.addRole(role);
                }
            }
            us.createUser(user, pass);
        }
        if (user == null) {
            throw new IllegalArgumentException("Can't find user '" + userLastName + ", " + userFirstName + "'");
        }
        Person person = personService.getPerson(user.getUserId());
        RelationshipType relationship = personService.getRelationshipTypeByName(relationshipType);
        PatientIdentifierType pit = ps.getPatientIdentifierTypeByName(identifierType);
        List<PatientIdentifier> found = ps.getPatientIdentifiers(identifier, Collections.singletonList(pit), null, null, null);
        if (found.size() != 1) {
            throw new IllegalArgumentException("Found " + found.size() + " patients with identifier '" + identifier + "' of type " + identifierType);
        }
        Person relative = personService.getPerson(found.get(0).getPatient().getPatientId());
        Relationship rel = new Relationship();
        rel.setPersonA(person);
        rel.setRelationshipType(relationship);
        rel.setPersonB(relative);
        relsToAdd.add(rel);
    }
    int addedSoFar = 0;
    for (Relationship rel : relsToAdd) {
        personService.saveRelationship(rel);
        ++addedSoFar;
    }
    return addedSoFar;
}

Example 2 with PersonService

use of org.openmrs.api.PersonService in project openmrs-core by openmrs.

the class ORUR01HandlerTest method processORU_R01_shouldProcessMultipleNK1Segments.

/**
 * @see ORUR01Handler#processORU_R01(ORU_R01)
 */
@Test
public void processORU_R01_shouldProcessMultipleNK1Segments() throws Exception {
    PersonService personService = Context.getPersonService();
    // the patient that is the focus of
    Patient patient = new Patient(3);
    // this hl7 message
    // the patient that is related to
    Patient relative = new Patient(2);
    // patientA
    // create a relationship in the database
    Relationship newRel = new Relationship();
    newRel.setRelationshipType(new RelationshipType(3));
    newRel.setPersonA(relative);
    newRel.setPersonB(patient);
    personService.saveRelationship(newRel);
    // verify relationship exists
    Assert.assertEquals(1, personService.getRelationships(relative, patient, new RelationshipType(3)).size());
    // process a new message with multiple NK1 segments
    // this one defines patientB as patientA's Sibling and Patient
    String hl7String = "MSH|^~\\&|FORMENTRY|AMRS.ELD|HL7LISTENER|AMRS.ELD|20090728170333||ORU^R01|gu99yBh4loLX2mh9cHaV|P|2.5|1||||||||4^AMRS.ELD.FORMID\r" + "PID|||3^^^^||Beren^John^Bondo||\r" + "NK1|1|Jones^Jane^Lee^^RN|2A^Sibling^99REL||||||||||||F|19751016|||||||||||||||||2^^^L^PI\r" + "NK1|2|Jones^Jane^Lee^^RN|1B^Patient^99REL||||||||||||F|19751016|||||||||||||||||2^^^L^PI\r" + "PV1||O|1^Unknown||||1^Super User (admin)|||||||||||||||||||||||||||||||||||||20090714|||||||V\r" + "ORC|RE||||||||20090728165937|1^Super User\r" + "OBR|1|||1238^MEDICAL RECORD OBSERVATIONS^99DCT\r" + "OBX|2|NM|5497^CD4 COUNT^99DCT||123|||||||||20090714\r" + "OBR|3|||23^FOOD CONSTRUCT^99DCT\r" + "OBX|1|CWE|21^FOOD ASSISTANCE FOR ENTIRE FAMILY^99DCT||22^UNKNOWN^99DCT^2471^UNKNOWN^99NAM|||||||||20090714";
    Message hl7message = parser.parse(hl7String);
    router.processMessage(hl7message);
    // verify existing relationship
    List<Relationship> rels = personService.getRelationships(relative, patient, new RelationshipType(3));
    Assert.assertTrue("existing relationship was not retained", !rels.isEmpty() && rels.size() == 1);
    // verify first new relationship
    rels = personService.getRelationships(patient, relative, new RelationshipType(2));
    Assert.assertTrue("first new relationship was not created", !rels.isEmpty() && rels.size() == 1);
    // verify second new relationship
    rels = personService.getRelationships(patient, relative, new RelationshipType(1));
    Assert.assertTrue("second new relationship was not created", !rels.isEmpty() && rels.size() == 1);
}

Example 3 with PersonService

use of org.openmrs.api.PersonService in project openmrs-core by openmrs.

the class ORUR01HandlerTest method processNK1_shouldNotCreateARelationshipIfOneExists.

/**
 * @see ORUR01Handler#processNK1(Patient,NK1)
 */
@Test
public void processNK1_shouldNotCreateARelationshipIfOneExists() throws Exception {
    PersonService personService = Context.getPersonService();
    // the patient that is the focus of
    Patient patient = new Patient(3);
    // this hl7 message
    // the patient that is related to
    Patient relative = new Patient(2);
    // patientA
    // create a relationship in the database
    Relationship rel = new Relationship();
    rel.setRelationshipType(new RelationshipType(3));
    rel.setPersonA(relative);
    rel.setPersonB(patient);
    personService.saveRelationship(rel);
    // verify relationship exists
    Assert.assertEquals(1, personService.getRelationships(relative, patient, new RelationshipType(3)).size());
    // process a message with a single NK1 segment
    // defines relative as patient's Parent
    String hl7String = "MSH|^~\\&|FORMENTRY|AMRS.ELD|HL7LISTENER|AMRS.ELD|20090728170332||ORU^R01|gu99yBh4loLX2mh9cHaV|P|2.5|1||||||||4^AMRS.ELD.FORMID\r" + "PID|||3^^^^||Beren^John^Bondo||\r" + "NK1|1|Jones^Jane^Lee^^RN|3A^Parent^99REL||||||||||||F|19751016|||||||||||||||||2^^^L^PI\r" + "PV1||O|1^Unknown||||1^Super User (admin)|||||||||||||||||||||||||||||||||||||20090714|||||||V\r" + "ORC|RE||||||||20090728165937|1^Super User\r" + "OBR|1|||1238^MEDICAL RECORD OBSERVATIONS^99DCT\r" + "OBX|2|NM|5497^CD4 COUNT^99DCT||123|||||||||20090714\r" + "OBR|3|||23^FOOD CONSTRUCT^99DCT\r" + "OBX|1|CWE|21^FOOD ASSISTANCE FOR ENTIRE FAMILY^99DCT||22^UNKNOWN^99DCT^2471^UNKNOWN^99NAM|||||||||20090714";
    ORUR01Handler oruHandler = new ORUR01Handler();
    Message hl7message = parser.parse(hl7String);
    ORU_R01 oru = (ORU_R01) hl7message;
    List<NK1> nk1List = oruHandler.getNK1List(oru);
    for (NK1 nk1 : nk1List) oruHandler.processNK1(patient, nk1);
    // verify existing relationship
    List<Relationship> rels = personService.getRelationships(relative, patient, new RelationshipType(3));
    Assert.assertTrue("existing relationship was not retained", !rels.isEmpty() && rels.size() == 1);
}

Example 4 with PersonService

use of org.openmrs.api.PersonService in project openmrs-core by openmrs.

the class ORUR01HandlerTest method processNK1_shouldCreateARelationshipFromANK1Segment.

/**
 * @see ORUR01Handler#processNK1(Patient,NK1)
 */
@Test
public void processNK1_shouldCreateARelationshipFromANK1Segment() throws Exception {
    PersonService personService = Context.getPersonService();
    // the patient that is the focus of
    Patient patient = new Patient(3);
    // this hl7 message
    // the patient that is related to
    Patient relative = new Patient(2);
    // patientA
    // process a message with a single NK1 segment
    // defines relative as patient's Parent
    String hl7String = "MSH|^~\\&|FORMENTRY|AMRS.ELD|HL7LISTENER|AMRS.ELD|20090728170332||ORU^R01|gu99yBh4loLX2mh9cHaV|P|2.5|1||||||||4^AMRS.ELD.FORMID\r" + "PID|||3^^^^||Beren^John^Bondo||\r" + "NK1|1|Jones^Jane^Lee^^RN|3A^Parent^99REL||||||||||||F|19751016|||||||||||||||||2^^^L^PI\r" + "PV1||O|1^Unknown||||1^Super User (admin)|||||||||||||||||||||||||||||||||||||20090714|||||||V\r" + "ORC|RE||||||||20090728165937|1^Super User\r" + "OBR|1|||1238^MEDICAL RECORD OBSERVATIONS^99DCT\r" + "OBX|2|NM|5497^CD4 COUNT^99DCT||123|||||||||20090714\r" + "OBR|3|||23^FOOD CONSTRUCT^99DCT\r" + "OBX|1|CWE|21^FOOD ASSISTANCE FOR ENTIRE FAMILY^99DCT||22^UNKNOWN^99DCT^2471^UNKNOWN^99NAM|||||||||20090714";
    ORUR01Handler oruHandler = new ORUR01Handler();
    Message hl7message = parser.parse(hl7String);
    ORU_R01 oru = (ORU_R01) hl7message;
    List<NK1> nk1List = oruHandler.getNK1List(oru);
    for (NK1 nk1 : nk1List) oruHandler.processNK1(patient, nk1);
    // verify relationship was created
    List<Relationship> rels = personService.getRelationships(relative, patient, new RelationshipType(3));
    Assert.assertTrue("new relationship was not created", !rels.isEmpty() && rels.size() == 1);
}

Example 5 with PersonService

use of org.openmrs.api.PersonService in project openmrs-core by openmrs.

the class ORUR01HandlerTest method processNK1_shouldCreateAPersonIfTheRelativeIsNotFound.

/**
 * @see ORUR01Handler#processNK1(Patient,NK1)
 */
@Test
public void processNK1_shouldCreateAPersonIfTheRelativeIsNotFound() throws Exception {
    // process a message with an invalid relative identifier
    PersonService personService = Context.getPersonService();
    // the patient that is the focus of
    Patient patient = new Patient(3);
    // this hl7 message
    String hl7String = "MSH|^~\\&|FORMENTRY|AMRS.ELD|HL7LISTENER|AMRS.ELD|20090728170332||ORU^R01|gu99yBh4loLX2mh9cHaV|P|2.5|1||||||||4^AMRS.ELD.FORMID\r" + "PID|||3^^^^||Beren^John^Bondo||\r" + "NK1|1|Jones^Jane^Lee^^RN|3A^Parent^99REL||||||||||||F|19751016|||||||||||||||||2178037d-f86b-4f12-8d8b-be3ebc220029^^^UUID^v4\r" + "PV1||O|1^Unknown||||1^Super User (admin)|||||||||||||||||||||||||||||||||||||20090714|||||||V\r" + "ORC|RE||||||||20090728165937|1^Super User\r" + "OBR|1|||1238^MEDICAL RECORD OBSERVATIONS^99DCT\r" + "OBX|2|NM|5497^CD4 COUNT^99DCT||123|||||||||20090714\r" + "OBR|3|||23^FOOD CONSTRUCT^99DCT\r" + "OBX|1|CWE|21^FOOD ASSISTANCE FOR ENTIRE FAMILY^99DCT||22^UNKNOWN^99DCT^2471^UNKNOWN^99NAM|||||||||20090714";
    ORUR01Handler oruHandler = new ORUR01Handler();
    Message hl7message = parser.parse(hl7String);
    ORU_R01 oru = (ORU_R01) hl7message;
    List<NK1> nk1List = oruHandler.getNK1List(oru);
    for (NK1 nk1 : nk1List) oruHandler.processNK1(patient, nk1);
    // find the relative in the database
    Person relative = personService.getPersonByUuid("2178037d-f86b-4f12-8d8b-be3ebc220029");
    Assert.assertNotNull("a new person was not created", relative);
    // see if the relative made it into the relationship properly
    List<Relationship> rels = personService.getRelationships(relative, patient, new RelationshipType(3));
    Assert.assertTrue("new relationship was not created", !rels.isEmpty() && rels.size() == 1);
}