Examples with OBR ca.uhn.hl7v2.model.v26.segment.OBR used on opensource projects

Example 21 with OBR

use of ca.uhn.hl7v2.model.v26.segment.OBR in project openmrs-core by openmrs.

the class ORUR01HandlerTest method processNK1_shouldFailIfTheCodingSystemIsNot99REL.

/**
 * @see ORUR01Handler#processNK1(Patient,NK1)
 */
@Test(expected = HL7Exception.class)
public void processNK1_shouldFailIfTheCodingSystemIsNot99REL() throws Exception {
    // process a message with an invalid coding system
    // the patient that is the focus of
    Patient patient = new Patient(3);
    // this hl7 message
    String hl7String = "MSH|^~\\&|FORMENTRY|AMRS.ELD|HL7LISTENER|AMRS.ELD|20090728170332||ORU^R01|gu99yBh4loLX2mh9cHaV|P|2.5|1||||||||4^AMRS.ELD.FORMID\r" + "PID|||3^^^^||Beren^John^Bondo||\r" + "NK1|1|Jones^Jane^Lee^^RN|3A^Parent^ACKFOO||||||||||||F|19751016|||||||||||||||||2^^^L^PI\r" + "PV1||O|1^Unknown||||1^Super User (admin)|||||||||||||||||||||||||||||||||||||20090714|||||||V\r" + "ORC|RE||||||||20090728165937|1^Super User\r" + "OBR|1|||1238^MEDICAL RECORD OBSERVATIONS^99DCT\r" + "OBX|2|NM|5497^CD4 COUNT^99DCT||123|||||||||20090714\r" + "OBR|3|||23^FOOD CONSTRUCT^99DCT\r" + "OBX|1|CWE|21^FOOD ASSISTANCE FOR ENTIRE FAMILY^99DCT||22^UNKNOWN^99DCT^2471^UNKNOWN^99NAM|||||||||20090714";
    ORUR01Handler oruHandler = new ORUR01Handler();
    Message hl7message = parser.parse(hl7String);
    ORU_R01 oru = (ORU_R01) hl7message;
    List<NK1> nk1List = oruHandler.getNK1List(oru);
    for (NK1 nk1 : nk1List) oruHandler.processNK1(patient, nk1);
}

Example 22 with OBR

use of ca.uhn.hl7v2.model.v26.segment.OBR in project openmrs-core by openmrs.

the class ORUR01HandlerTest method processMessage_shouldUnderstandFormUuidIfPresent.

/**
 * @see ORUR01Handler#processMessage(Message)
 */
@Test
public void processMessage_shouldUnderstandFormUuidIfPresent() throws Exception {
    // save original encounter count
    List<Encounter> encounters = Context.getEncounterService().getEncountersByPatient(new Patient(3));
    Integer originalEncounters = encounters.size();
    // process message
    String hl7String = "MSH|^~\\&|FORMENTRY|AMRS.ELD|HL7LISTENER|AMRS.ELD|20090728170332||ORU^R01|gu99yBh4loLX2mh9cHaV|P|2.5|1||||||||d9218f76-6c39-45f4-8efa-4c5c6c199f50^AMRS.ELD.FORMUUID\r" + "PID|||3^^^^||Beren^John^Bondo||\r" + "PV1||O|1^Unknown||||1^Super User (admin)|||||||||||||||||||||||||||||||||||||20090714|||||||V\r" + "ORC|RE||||||||20090728165937|1^Super User\r" + "OBR|1|||1238^MEDICAL RECORD OBSERVATIONS^99DCT\r" + "OBX|2|NM|5497^CD4 COUNT^99DCT||123|||||||||20090714";
    Message hl7message = parser.parse(hl7String);
    router.processMessage(hl7message);
    // make sure an encounter was added
    encounters = Context.getEncounterService().getEncountersByPatient(new Patient(3));
    Assert.assertEquals(originalEncounters + 1, encounters.size());
    // get last encounter
    Encounter enc = encounters.get(encounters.size() - 1);
    // check the form uuid
    Form form = enc.getForm();
    Assert.assertEquals("d9218f76-6c39-45f4-8efa-4c5c6c199f50", form.getUuid());
}

Example 23 with OBR

use of ca.uhn.hl7v2.model.v26.segment.OBR in project openmrs-core by openmrs.

the class ORUR01HandlerTest method processMessage_shouldSetValueAsBooleanForObsIfTheAnswerIs0Or1AndQuestionDatatypeIsBoolean.

/**
 * @see ORUR01Handler#processMessage(Message)
 */
@Test
public void processMessage_shouldSetValueAsBooleanForObsIfTheAnswerIs0Or1AndQuestionDatatypeIsBoolean() throws Exception {
    GlobalProperty trueConceptGlobalProperty = new GlobalProperty(OpenmrsConstants.GLOBAL_PROPERTY_TRUE_CONCEPT, "7", "Concept id of the concept defining the TRUE boolean concept");
    GlobalProperty falseConceptGlobalProperty = new GlobalProperty(OpenmrsConstants.GLOBAL_PROPERTY_FALSE_CONCEPT, "8", "Concept id of the concept defining the TRUE boolean concept");
    Context.getAdministrationService().saveGlobalProperty(trueConceptGlobalProperty);
    Context.getAdministrationService().saveGlobalProperty(falseConceptGlobalProperty);
    ObsService os = Context.getObsService();
    Assert.assertNull(os.getObs(17));
    String hl7string = "MSH|^~\\&|FORMENTRY|AMRS.ELD|HL7LISTENER|AMRS.ELD|20080226102656||ORU^R01|JqnfhKKtouEz8kzTk6Zo|P|2.5|1||||||||16^AMRS.ELD.FORMID\r" + "PID|||7^^^^||Collet^Test^Chebaskwony||\r" + "PV1||O|1^Unknown Location||||1^Super User (1-8)|||||||||||||||||||||||||||||||||||||20080212|||||||V\r" + "ORC|RE||||||||20080226102537|1^Super User\r" + "OBR|1|||1238^MEDICAL RECORD OBSERVATIONS^99DCT\r" + "OBX|1|NM|18^FOOD ASSISTANCE^99DCT||0|||||||||20080206";
    // the expected question for the obs in the hl7 message has to be
    // Boolean
    Assert.assertEquals("Boolean", Context.getConceptService().getConcept(18).getDatatype().getName());
    List<Obs> oldList = os.getObservationsByPersonAndConcept(new Person(7), new Concept(18));
    Message hl7message = parser.parse(hl7string);
    router.processMessage(hl7message);
    List<Obs> newList = os.getObservationsByPersonAndConcept(new Person(7), new Concept(18));
    Obs newObservation = null;
    for (Obs newObs : newList) {
        if (!oldList.contains(newObs) && !newObs.isObsGrouping()) {
            newObservation = newObs;
        }
    }
    Assert.assertEquals(false, newObservation.getValueBoolean());
}

Example 24 with OBR

use of ca.uhn.hl7v2.model.v26.segment.OBR in project openmrs-core by openmrs.

the class ORUR01HandlerTest method processMessage_shouldAppendToAnExistingEncounter.

/**
 * If an hl7 message contains a "visit number" pv1-19 value, then assume its an encounter_id and
 * that information in the hl7 message should be appended to that encounter.
 *
 * @see ORUR01Handler#processMessage(Message)
 */
@Test
public void processMessage_shouldAppendToAnExistingEncounter() throws Exception {
    // there should be an encounter with encounter_id == 3 for this test
    // to append to
    assertNotNull(Context.getEncounterService().getEncounter(3));
    String hl7string = "MSH|^~\\&|FORMENTRY|AMRS.ELD|HL7LISTENER|AMRS.ELD|20080902151831||ORU^R01|yow3LEP6bycnLfoPyI31|P|2.5|1||||||||3^AMRS.ELD.FORMID\r" + "PID|||7^^^^||Indakasi^Testarius^Ambote||\r" + "PV1||O|1||||1^Super User (1-8)||||||||||||3|||||||||||||||||||||||||20080831|||||||V\r" + "ORC|RE||||||||20080902150000|1^Super User\r" + "OBR|1|||1238^MEDICAL RECORD OBSERVATIONS^99DCT\r" + "OBX|1|NM|10^CD4 COUNT^99DCT||250|||||||||20080831";
    Message hl7message = parser.parse(hl7string);
    router.processMessage(hl7message);
    Patient patient = new Patient(7);
    Concept question = new Concept(10);
    // check that the CD4 count obs in the hl7 message was appended to the
    // encounter with encounter_id == 3 and _not_ put into a new encounter
    // that has encounter_id == (autoincremented value)
    List<Obs> obsForPatient = Context.getObsService().getObservationsByPersonAndConcept(patient, question);
    // there should be 1 obs now for
    assertEquals(1, obsForPatient.size());
    // this patient
    assertEquals(3, obsForPatient.get(0).getEncounter().getId().intValue());
}

Example 25 with OBR

use of ca.uhn.hl7v2.model.v26.segment.OBR in project openmrs-core by openmrs.

the class ORUR01HandlerTest method processORU_R01_shouldProcessMultipleNK1Segments.

/**
 * @see ORUR01Handler#processORU_R01(ORU_R01)
 */
@Test
public void processORU_R01_shouldProcessMultipleNK1Segments() throws Exception {
    PersonService personService = Context.getPersonService();
    // the patient that is the focus of
    Patient patient = new Patient(3);
    // this hl7 message
    // the patient that is related to
    Patient relative = new Patient(2);
    // patientA
    // create a relationship in the database
    Relationship newRel = new Relationship();
    newRel.setRelationshipType(new RelationshipType(3));
    newRel.setPersonA(relative);
    newRel.setPersonB(patient);
    personService.saveRelationship(newRel);
    // verify relationship exists
    Assert.assertEquals(1, personService.getRelationships(relative, patient, new RelationshipType(3)).size());
    // process a new message with multiple NK1 segments
    // this one defines patientB as patientA's Sibling and Patient
    String hl7String = "MSH|^~\\&|FORMENTRY|AMRS.ELD|HL7LISTENER|AMRS.ELD|20090728170333||ORU^R01|gu99yBh4loLX2mh9cHaV|P|2.5|1||||||||4^AMRS.ELD.FORMID\r" + "PID|||3^^^^||Beren^John^Bondo||\r" + "NK1|1|Jones^Jane^Lee^^RN|2A^Sibling^99REL||||||||||||F|19751016|||||||||||||||||2^^^L^PI\r" + "NK1|2|Jones^Jane^Lee^^RN|1B^Patient^99REL||||||||||||F|19751016|||||||||||||||||2^^^L^PI\r" + "PV1||O|1^Unknown||||1^Super User (admin)|||||||||||||||||||||||||||||||||||||20090714|||||||V\r" + "ORC|RE||||||||20090728165937|1^Super User\r" + "OBR|1|||1238^MEDICAL RECORD OBSERVATIONS^99DCT\r" + "OBX|2|NM|5497^CD4 COUNT^99DCT||123|||||||||20090714\r" + "OBR|3|||23^FOOD CONSTRUCT^99DCT\r" + "OBX|1|CWE|21^FOOD ASSISTANCE FOR ENTIRE FAMILY^99DCT||22^UNKNOWN^99DCT^2471^UNKNOWN^99NAM|||||||||20090714";
    Message hl7message = parser.parse(hl7String);
    router.processMessage(hl7message);
    // verify existing relationship
    List<Relationship> rels = personService.getRelationships(relative, patient, new RelationshipType(3));
    Assert.assertTrue("existing relationship was not retained", !rels.isEmpty() && rels.size() == 1);
    // verify first new relationship
    rels = personService.getRelationships(patient, relative, new RelationshipType(2));
    Assert.assertTrue("first new relationship was not created", !rels.isEmpty() && rels.size() == 1);
    // verify second new relationship
    rels = personService.getRelationships(patient, relative, new RelationshipType(1));
    Assert.assertTrue("second new relationship was not created", !rels.isEmpty() && rels.size() == 1);
}