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Example 1 with ValidationContext

use of ca.uhn.hl7v2.validation.ValidationContext in project camel by apache.

the class ValidationContextPredicate method matches.

@Override
public boolean matches(Exchange exchange) {
    try {
        Message message = exchange.getIn().getBody(Message.class);
        ValidationContext context = validatorExpression != null ? validatorExpression.evaluate(exchange, ValidationContext.class) : dynamicValidationContext(message, exchange.getIn().getHeader(HL7Constants.HL7_CONTEXT, HapiContext.class));
        MessageValidator validator = new MessageValidator(context, false);
        return validator.validate(message);
    } catch (HL7Exception e) {
        throw ObjectHelper.wrapRuntimeCamelException(e);
    }
}
Also used : Message(ca.uhn.hl7v2.model.Message) HL7Exception(ca.uhn.hl7v2.HL7Exception) MessageValidator(ca.uhn.hl7v2.validation.MessageValidator) ValidationContext(ca.uhn.hl7v2.validation.ValidationContext)

Example 2 with ValidationContext

use of ca.uhn.hl7v2.validation.ValidationContext in project camel by apache.

the class HL7ValidateTest method createRouteBuilder.

protected RouteBuilder createRouteBuilder() throws Exception {
    HapiContext hapiContext = new DefaultHapiContext();
    hapiContext.setValidationContext(new NoValidation());
    Parser p = new GenericParser(hapiContext);
    hl7 = new HL7DataFormat();
    hl7.setParser(p);
    /*
         * Let's start by adding a validation rule to the default validation
         * that disallows PID-2 to be empty.
         */
    ValidationRuleBuilder builder = new ValidationRuleBuilder() {

        private static final long serialVersionUID = 1L;

        @Override
        protected void configure() {
            forVersion(Version.V24).message("ADT", "*").terser("PID-2", not(empty()));
        }
    };
    ValidationContext customValidationContext = ValidationContextFactory.fromBuilder(builder);
    HapiContext customContext = new DefaultHapiContext(customValidationContext);
    final Parser customParser = new GenericParser(customContext);
    return new RouteBuilder() {

        public void configure() throws Exception {
            from("direct:unmarshalFailed").unmarshal().hl7().to("mock:unmarshal");
            from("direct:unmarshalOk").unmarshal().hl7(false).to("mock:unmarshal");
            from("direct:unmarshalOkCustom").unmarshal(hl7).to("mock:unmarshal");
            from("direct:start1").marshal().hl7(customParser).to("mock:end");
            from("direct:start2").marshal().hl7(true).to("mock:end");
        }
    };
}
Also used : RouteBuilder(org.apache.camel.builder.RouteBuilder) DefaultHapiContext(ca.uhn.hl7v2.DefaultHapiContext) NoValidation(ca.uhn.hl7v2.validation.impl.NoValidation) HapiContext(ca.uhn.hl7v2.HapiContext) DefaultHapiContext(ca.uhn.hl7v2.DefaultHapiContext) ValidationRuleBuilder(ca.uhn.hl7v2.validation.builder.ValidationRuleBuilder) Parser(ca.uhn.hl7v2.parser.Parser) GenericParser(ca.uhn.hl7v2.parser.GenericParser) GenericParser(ca.uhn.hl7v2.parser.GenericParser) ValidationContext(ca.uhn.hl7v2.validation.ValidationContext)

Example 3 with ValidationContext

use of ca.uhn.hl7v2.validation.ValidationContext in project pentaho-kettle by pentaho.

the class HL7MLLPAcknowledge method execute.

public Result execute(Result previousResult, int nr) {
    Result result = previousResult;
    try {
        String serverName = environmentSubstitute(server);
        int portNumber = Integer.parseInt(environmentSubstitute(port));
        String variable = environmentSubstitute(variableName);
        MLLPSocketCacheEntry entry = MLLPSocketCache.getInstance().getServerSocketStreamSource(serverName, portNumber);
        MLLPTransport transport = entry.getTransport();
        // 
        synchronized (transport) {
            String message = getVariable(variable);
            // Parse the message and extract the acknowledge message.
            // 
            Parser parser = new GenericParser();
            ValidationContext validationContext = new NoValidation();
            parser.setValidationContext(validationContext);
            Message msg = parser.parse(message);
            Message ack = msg.generateACK();
            String ackMessage = ack.encode();
            String APPNAME = "PDI4";
            if (ack instanceof ca.uhn.hl7v2.model.v21.message.ACK) {
                ca.uhn.hl7v2.model.v21.message.ACK mod = (ca.uhn.hl7v2.model.v21.message.ACK) ack;
                mod.getMSH().getSENDINGAPPLICATION().setValue(APPNAME);
                mod.getMSH().getSENDINGFACILITY().setValue(APPNAME);
                ackMessage = mod.encode();
            } else if (ack instanceof ca.uhn.hl7v2.model.v22.message.ACK) {
                ca.uhn.hl7v2.model.v22.message.ACK mod = (ca.uhn.hl7v2.model.v22.message.ACK) ack;
                mod.getMSH().getSendingApplication().setValue(APPNAME);
                mod.getMSH().getSendingFacility().setValue(APPNAME);
                ackMessage = mod.encode();
            } else if (ack instanceof ca.uhn.hl7v2.model.v23.message.ACK) {
                ca.uhn.hl7v2.model.v23.message.ACK mod = (ca.uhn.hl7v2.model.v23.message.ACK) ack;
                mod.getMSH().getSendingApplication().getNamespaceID().setValue(APPNAME);
                mod.getMSH().getSendingFacility().getNamespaceID().setValue(APPNAME);
                ackMessage = mod.encode();
            } else if (ack instanceof ca.uhn.hl7v2.model.v231.message.ACK) {
                ca.uhn.hl7v2.model.v231.message.ACK mod = (ca.uhn.hl7v2.model.v231.message.ACK) ack;
                mod.getMSH().getSendingApplication().getNamespaceID().setValue(APPNAME);
                mod.getMSH().getSendingFacility().getNamespaceID().setValue(APPNAME);
                ackMessage = mod.encode();
            } else if (ack instanceof ca.uhn.hl7v2.model.v24.message.ACK) {
                ca.uhn.hl7v2.model.v24.message.ACK mod = (ca.uhn.hl7v2.model.v24.message.ACK) ack;
                mod.getMSH().getSendingApplication().getNamespaceID().setValue(APPNAME);
                mod.getMSH().getSendingFacility().getNamespaceID().setValue(APPNAME);
                ackMessage = mod.encode();
            } else if (ack instanceof ca.uhn.hl7v2.model.v25.message.ACK) {
                ca.uhn.hl7v2.model.v25.message.ACK mod = (ca.uhn.hl7v2.model.v25.message.ACK) ack;
                mod.getMSH().getSendingApplication().getNamespaceID().setValue(APPNAME);
                mod.getMSH().getSendingFacility().getNamespaceID().setValue(APPNAME);
                ackMessage = mod.encode();
            } else if (ack instanceof ca.uhn.hl7v2.model.v251.message.ACK) {
                ca.uhn.hl7v2.model.v251.message.ACK mod = (ca.uhn.hl7v2.model.v251.message.ACK) ack;
                mod.getMSH().getSendingApplication().getNamespaceID().setValue(APPNAME);
                mod.getMSH().getSendingFacility().getNamespaceID().setValue(APPNAME);
                ackMessage = mod.encode();
            } else if (ack instanceof ca.uhn.hl7v2.model.v26.message.ACK) {
                ca.uhn.hl7v2.model.v26.message.ACK mod = (ca.uhn.hl7v2.model.v26.message.ACK) ack;
                mod.getMSH().getSendingApplication().getNamespaceID().setValue(APPNAME);
                mod.getMSH().getSendingFacility().getNamespaceID().setValue(APPNAME);
                ackMessage = mod.encode();
            } else {
                logError("This job entry does not support the HL7 dialect used. Found ACK class: " + ack.getClass().getName());
            }
            Transportable transportable = new TransportableImpl(ackMessage);
            transport.doSend(transportable);
        }
        // All went well..
        // 
        result.setNrErrors(0);
        result.setResult(true);
    } catch (Exception e) {
        log.logError(BaseMessages.getString(PKG, "HL7MLLPInput.Exception.UnexpectedError"), e);
        result.setNrErrors(1);
        result.setResult(false);
    }
    return result;
}
Also used : Message(ca.uhn.hl7v2.model.Message) Result(org.pentaho.di.core.Result) MLLPSocketCacheEntry(org.pentaho.di.trans.steps.hl7input.common.MLLPSocketCacheEntry) Transportable(ca.uhn.hl7v2.protocol.Transportable) TransportableImpl(ca.uhn.hl7v2.protocol.impl.TransportableImpl) KettleException(org.pentaho.di.core.exception.KettleException) KettleDatabaseException(org.pentaho.di.core.exception.KettleDatabaseException) KettleXMLException(org.pentaho.di.core.exception.KettleXMLException) Parser(ca.uhn.hl7v2.parser.Parser) GenericParser(ca.uhn.hl7v2.parser.GenericParser) GenericParser(ca.uhn.hl7v2.parser.GenericParser) ValidationContext(ca.uhn.hl7v2.validation.ValidationContext) MLLPTransport(ca.uhn.hl7v2.protocol.impl.MLLPTransport) NoValidation(ca.uhn.hl7v2.validation.impl.NoValidation)

Example 4 with ValidationContext

use of ca.uhn.hl7v2.validation.ValidationContext in project pentaho-kettle by pentaho.

the class HL7MLLPInput method execute.

public Result execute(Result previousResult, int nr) {
    Result result = previousResult;
    try {
        String serverName = environmentSubstitute(server);
        int portNumber = Integer.parseInt(environmentSubstitute(port));
        String messageVariable = environmentSubstitute(messageVariableName);
        String messageTypeVariable = environmentSubstitute(messageTypeVariableName);
        String versionVariable = environmentSubstitute(versionVariableName);
        MLLPSocketCacheEntry entry = MLLPSocketCache.getInstance().getServerSocketStreamSource(serverName, portNumber);
        if (entry.getJobListener() != null) {
            parentJob.addJobListener(entry.getJobListener());
        }
        MLLPTransport transport = entry.getTransport();
        // 
        synchronized (transport) {
            Transportable transportable = transport.doReceive();
            String message = transportable.getMessage();
            logDetailed("Received message: " + message);
            parentJob.setVariable(messageVariable, message);
            // Parse the message and extract the control ID.
            // 
            Parser parser = new GenericParser();
            ValidationContext validationContext = new NoValidation();
            parser.setValidationContext(validationContext);
            Message msg = parser.parse(message);
            Structure structure = msg.get("MSH");
            String messageType = null;
            String version = msg.getVersion();
            if (structure instanceof ca.uhn.hl7v2.model.v21.segment.MSH) {
                messageType = ((ca.uhn.hl7v2.model.v21.segment.MSH) structure).getMESSAGETYPE().encode();
            } else if (structure instanceof ca.uhn.hl7v2.model.v22.segment.MSH) {
                messageType = ((ca.uhn.hl7v2.model.v22.segment.MSH) structure).getMessageType().encode();
            } else if (structure instanceof ca.uhn.hl7v2.model.v23.segment.MSH) {
                messageType = ((ca.uhn.hl7v2.model.v23.segment.MSH) structure).getMessageType().encode();
            } else if (structure instanceof ca.uhn.hl7v2.model.v231.segment.MSH) {
                messageType = ((ca.uhn.hl7v2.model.v231.segment.MSH) structure).getMessageType().getMessageStructure().getValue();
            } else if (structure instanceof ca.uhn.hl7v2.model.v24.segment.MSH) {
                messageType = ((ca.uhn.hl7v2.model.v24.segment.MSH) structure).getMessageType().getMessageStructure().getValue();
            } else if (structure instanceof ca.uhn.hl7v2.model.v25.segment.MSH) {
                messageType = ((ca.uhn.hl7v2.model.v25.segment.MSH) structure).getMessageType().getMessageStructure().getValue();
            } else if (structure instanceof ca.uhn.hl7v2.model.v251.segment.MSH) {
                messageType = ((ca.uhn.hl7v2.model.v251.segment.MSH) structure).getMessageType().getMessageStructure().getValue();
            } else if (structure instanceof ca.uhn.hl7v2.model.v26.segment.MSH) {
                messageType = ((ca.uhn.hl7v2.model.v26.segment.MSH) structure).getMessageType().getMessageStructure().getValue();
            } else {
                logError("This job entry does not support the HL7 dialect used. Found MSH class: " + structure.getClass().getName());
            }
            if (!Utils.isEmpty(messageTypeVariable)) {
                parentJob.setVariable(messageTypeVariable, messageType);
            }
            if (!Utils.isEmpty(versionVariable)) {
                parentJob.setVariable(versionVariable, version);
            }
        }
        // All went well..
        // 
        result.setNrErrors(0);
        result.setResult(true);
    } catch (Exception e) {
        log.logError(BaseMessages.getString(PKG, "HL7MLLPInput.Exception.UnexpectedError"), e);
        result.setNrErrors(1);
        result.setResult(false);
    }
    return result;
}
Also used : Message(ca.uhn.hl7v2.model.Message) Result(org.pentaho.di.core.Result) MLLPSocketCacheEntry(org.pentaho.di.trans.steps.hl7input.common.MLLPSocketCacheEntry) Structure(ca.uhn.hl7v2.model.Structure) Transportable(ca.uhn.hl7v2.protocol.Transportable) KettleException(org.pentaho.di.core.exception.KettleException) KettleDatabaseException(org.pentaho.di.core.exception.KettleDatabaseException) KettleXMLException(org.pentaho.di.core.exception.KettleXMLException) Parser(ca.uhn.hl7v2.parser.Parser) GenericParser(ca.uhn.hl7v2.parser.GenericParser) GenericParser(ca.uhn.hl7v2.parser.GenericParser) ValidationContext(ca.uhn.hl7v2.validation.ValidationContext) MLLPTransport(ca.uhn.hl7v2.protocol.impl.MLLPTransport) NoValidation(ca.uhn.hl7v2.validation.impl.NoValidation)

Example 5 with ValidationContext

use of ca.uhn.hl7v2.validation.ValidationContext in project nifi by apache.

the class ExtractHL7Attributes method onTrigger.

@Override
public void onTrigger(final ProcessContext context, final ProcessSession session) throws ProcessException {
    FlowFile flowFile = session.get();
    if (flowFile == null) {
        return;
    }
    final Charset charset = Charset.forName(context.getProperty(CHARACTER_SET).evaluateAttributeExpressions(flowFile).getValue());
    final Boolean useSegmentNames = context.getProperty(USE_SEGMENT_NAMES).asBoolean();
    final Boolean parseSegmentFields = context.getProperty(PARSE_SEGMENT_FIELDS).asBoolean();
    final Boolean skipValidation = context.getProperty(SKIP_VALIDATION).asBoolean();
    final String inputVersion = context.getProperty(HL7_INPUT_VERSION).getValue();
    final byte[] buffer = new byte[(int) flowFile.getSize()];
    session.read(flowFile, new InputStreamCallback() {

        @Override
        public void process(final InputStream in) throws IOException {
            StreamUtils.fillBuffer(in, buffer);
        }
    });
    @SuppressWarnings("resource") final HapiContext hapiContext = new DefaultHapiContext();
    if (!inputVersion.equals("autodetect")) {
        hapiContext.setModelClassFactory(new CanonicalModelClassFactory(inputVersion));
    }
    if (skipValidation) {
        hapiContext.setValidationContext((ValidationContext) ValidationContextFactory.noValidation());
    }
    final PipeParser parser = hapiContext.getPipeParser();
    final String hl7Text = new String(buffer, charset);
    try {
        final Message message = parser.parse(hl7Text);
        final Map<String, String> attributes = getAttributes(message, useSegmentNames, parseSegmentFields);
        flowFile = session.putAllAttributes(flowFile, attributes);
        getLogger().debug("Added the following attributes for {}: {}", new Object[] { flowFile, attributes });
    } catch (final HL7Exception e) {
        getLogger().error("Failed to extract attributes from {} due to {}", new Object[] { flowFile, e });
        session.transfer(flowFile, REL_FAILURE);
        return;
    }
    session.transfer(flowFile, REL_SUCCESS);
}
Also used : FlowFile(org.apache.nifi.flowfile.FlowFile) PipeParser(ca.uhn.hl7v2.parser.PipeParser) Message(ca.uhn.hl7v2.model.Message) InputStream(java.io.InputStream) Charset(java.nio.charset.Charset) IOException(java.io.IOException) CanonicalModelClassFactory(ca.uhn.hl7v2.parser.CanonicalModelClassFactory) DefaultHapiContext(ca.uhn.hl7v2.DefaultHapiContext) InputStreamCallback(org.apache.nifi.processor.io.InputStreamCallback) HL7Exception(ca.uhn.hl7v2.HL7Exception) DefaultHapiContext(ca.uhn.hl7v2.DefaultHapiContext) HapiContext(ca.uhn.hl7v2.HapiContext)

Aggregations

Message (ca.uhn.hl7v2.model.Message)4 ValidationContext (ca.uhn.hl7v2.validation.ValidationContext)4 GenericParser (ca.uhn.hl7v2.parser.GenericParser)3 Parser (ca.uhn.hl7v2.parser.Parser)3 NoValidation (ca.uhn.hl7v2.validation.impl.NoValidation)3 DefaultHapiContext (ca.uhn.hl7v2.DefaultHapiContext)2 HL7Exception (ca.uhn.hl7v2.HL7Exception)2 HapiContext (ca.uhn.hl7v2.HapiContext)2 Transportable (ca.uhn.hl7v2.protocol.Transportable)2 MLLPTransport (ca.uhn.hl7v2.protocol.impl.MLLPTransport)2 Result (org.pentaho.di.core.Result)2 KettleDatabaseException (org.pentaho.di.core.exception.KettleDatabaseException)2 KettleException (org.pentaho.di.core.exception.KettleException)2 KettleXMLException (org.pentaho.di.core.exception.KettleXMLException)2 MLLPSocketCacheEntry (org.pentaho.di.trans.steps.hl7input.common.MLLPSocketCacheEntry)2 Structure (ca.uhn.hl7v2.model.Structure)1 CanonicalModelClassFactory (ca.uhn.hl7v2.parser.CanonicalModelClassFactory)1 PipeParser (ca.uhn.hl7v2.parser.PipeParser)1 TransportableImpl (ca.uhn.hl7v2.protocol.impl.TransportableImpl)1 MessageValidator (ca.uhn.hl7v2.validation.MessageValidator)1