Examples with VCImageInfo cbit.image.VCImageInfo used on opensource projects

Example 6 with VCImageInfo

use of cbit.image.VCImageInfo in project vcell by virtualcell.

the class ImageDbTreeModel method createBaseTree.

/**
 * Insert the method's description here.
 * Creation date: (11/28/00 1:06:51 PM)
 * @return cbit.vcell.desktop.BioModelNode
 * @param docManager cbit.vcell.clientdb.DocumentManager
 */
private BioModelNode createBaseTree() throws DataAccessException {
    VCImageInfo[] imageInfos = getDocumentManager().getImageInfos();
    BioModelNode rootRootNode = new BioModelNode("Images", true);
    // 
    // get list of users (owners)
    // 
    Vector<User> ownerList = new Vector<User>();
    ownerList.addElement(getDocumentManager().getUser());
    for (int i = 0; i < imageInfos.length; i++) {
        VCImageInfo imageInfo = imageInfos[i];
        if (!ownerList.contains(imageInfo.getVersion().getOwner())) {
            ownerList.addElement(imageInfo.getVersion().getOwner());
        }
    }
    // 
    // for each user
    // 
    TreeMap<String, BioModelNode> treeMap = new TreeMap<String, BioModelNode>();
    for (int ownerIndex = 0; ownerIndex < ownerList.size(); ownerIndex++) {
        User owner = (User) ownerList.elementAt(ownerIndex);
        BioModelNode ownerNode = createOwnerSubTree(owner);
        if (owner.equals(getDocumentManager().getUser()) || ownerNode.getChildCount() > 0) {
            treeMap.put(owner.getName().toLowerCase(), ownerNode);
        }
    }
    // 
    rootRootNode.add((BioModelNode) treeMap.remove(getDocumentManager().getUser().getName().toLowerCase()));
    BioModelNode otherUsersNode = new BioModelNode("Images Neighborhood", true);
    rootRootNode.add(otherUsersNode);
    Object[] bmnArr = treeMap.values().toArray();
    for (int i = 0; i < bmnArr.length; i += 1) {
        otherUsersNode.add((BioModelNode) bmnArr[i]);
    }
    return rootRootNode;
}

Example 7 with VCImageInfo

use of cbit.image.VCImageInfo in project vcell by virtualcell.

the class ImageDbTreePanel method treeSelection.

/**
 * Comment
 */
private void treeSelection() {
    TreeSelectionModel treeSelectionModel = getselectionModel1();
    TreePath treePath = treeSelectionModel.getSelectionPath();
    if (treePath == null) {
        setSelectedVersionInfo(null);
        return;
    }
    BioModelNode bioModelNode = (BioModelNode) treePath.getLastPathComponent();
    Object object = bioModelNode.getUserObject();
    if (object instanceof VersionInfo) {
        setSelectedVersionInfo((VersionInfo) object);
    // 
    // if selected parent of VCImageInfo, setSelection as it's SimulationInfo
    // 
    } else if (object instanceof String && bioModelNode.getChildCount() > 0 && ((BioModelNode) bioModelNode.getChildAt(0)).getUserObject() instanceof VCImageInfo) {
        VCImageInfo imgInfo = (VCImageInfo) ((BioModelNode) bioModelNode.getChildAt(0)).getUserObject();
        setSelectedVersionInfo(imgInfo);
    } else {
        setSelectedVersionInfo(null);
    }
}

Example 8 with VCImageInfo

use of cbit.image.VCImageInfo in project vcell by virtualcell.

the class ImageTable method getInfo.

/**
 * This method was created in VisualAge.
 * @return VCImage
 * @param rset ResultSet
 * @param log SessionLog
 */
public VersionInfo getInfo(ResultSet rset, Connection con, DatabaseSyntax dbSyntax) throws SQLException, DataAccessException {
    GIFImage gifImage = null;
    try {
        // gifImage = new GIFImage(rset.getBytes(BrowseImageDataTable.table.data.toString()));
        byte[] gifData = (byte[]) DbDriver.getLOB(rset, BrowseImageDataTable.table.data, dbSyntax);
        gifImage = new GIFImage(gifData);
    // 
    } catch (GifParsingException e) {
        throw new DataAccessException("Error Parsing browseImage");
    }
    java.math.BigDecimal groupid = rset.getBigDecimal(VersionTable.privacy_ColumnName);
    Version version = getVersion(rset, DbDriver.getGroupAccessFromGroupID(con, groupid));
    int x = rset.getInt(ImageTable.table.numX.toString());
    int y = rset.getInt(ImageTable.table.numY.toString());
    int z = rset.getInt(ImageTable.table.numZ.toString());
    org.vcell.util.ISize size = new org.vcell.util.ISize(x, y, z);
    double extentX = rset.getBigDecimal(ExtentTable.table.extentX.toString()).doubleValue();
    double extentY = rset.getBigDecimal(ExtentTable.table.extentY.toString()).doubleValue();
    double extentZ = rset.getBigDecimal(ExtentTable.table.extentZ.toString()).doubleValue();
    org.vcell.util.Extent extent = new org.vcell.util.Extent(extentX, extentY, extentZ);
    String softwareVersion = rset.getString(SoftwareVersionTable.table.softwareVersion.toString());
    return new VCImageInfo(version, size, extent, gifImage, VCellSoftwareVersion.fromString(softwareVersion));
}

Example 9 with VCImageInfo

use of cbit.image.VCImageInfo in project vcell by virtualcell.

the class ClientDocumentManager method setGroupPrivate.

/**
 * Insert the method's description here.
 * Creation date: (11/28/00 5:43:44 PM)
 * @param bioModelInfo cbit.vcell.biomodel.BioModelInfo
 */
public VCImageInfo setGroupPrivate(VCImageInfo imageInfo) throws DataAccessException {
    try {
        // 
        // unpublish from database
        // 
        VCImageInfo newImageInfo = (VCImageInfo) setGroupPrivate0(imageInfo, VersionableType.VCImage, imgInfoHash);
        // 
        // delete Image from cache
        // 
        xmlHash.remove(imageInfo.getVersion().getVersionKey());
        fireDatabaseUpdate(new DatabaseEvent(this, DatabaseEvent.UPDATE, imageInfo, newImageInfo));
        return newImageInfo;
    } catch (RemoteProxyException e) {
        handleRemoteProxyException(e);
        throw new DataAccessException(e.getMessage());
    }
}

Example 10 with VCImageInfo

use of cbit.image.VCImageInfo in project vcell by virtualcell.

the class ClientDocumentManager method removeUserFromGroup.

/**
 * Insert the method's description here.
 * Creation date: (11/28/00 5:43:44 PM)
 * @param bioModelInfo cbit.vcell.biomodel.BioModelInfo
 */
public VCImageInfo removeUserFromGroup(VCImageInfo imageInfo, String userToRemove) throws DataAccessException {
    try {
        // 
        // publish from database
        // 
        VCImageInfo newImageInfo = (VCImageInfo) removeUserFromGroup0(imageInfo, VersionableType.VCImage, imgInfoHash, userToRemove);
        // 
        // delete Image from cache
        // 
        xmlHash.remove(imageInfo.getVersion().getVersionKey());
        fireDatabaseUpdate(new DatabaseEvent(this, DatabaseEvent.UPDATE, imageInfo, newImageInfo));
        return newImageInfo;
    } catch (RemoteProxyException e) {
        handleRemoteProxyException(e);
        throw new DataAccessException(e.getMessage());
    }
}