Examples with VCImageInfo cbit.image.VCImageInfo used on opensource projects

Example 16 with VCImageInfo

use of cbit.image.VCImageInfo in project vcell by virtualcell.

the class ClientRequestManager method createSelectLoadGeomTask.

private AsynchClientTask createSelectLoadGeomTask(final TopLevelWindowManager requester) {
    AsynchClientTask selectLoadGeomTask = new AsynchClientTask("Select/Load geometry...", AsynchClientTask.TASKTYPE_NONSWING_BLOCKING) {

        @Override
        public void run(Hashtable<String, Object> hashTable) throws Exception {
            VersionInfo vcVersionInfo = (VersionInfo) hashTable.get(VERSIONINFO_KEY);
            Geometry geom = null;
            if (vcVersionInfo instanceof VCDocumentInfo) {
                geom = getGeometryFromDocumentSelection(requester.getComponent(), (VCDocumentInfo) vcVersionInfo, false);
            } else if (vcVersionInfo instanceof VCImageInfo) {
                VCImage img = getDocumentManager().getImage((VCImageInfo) vcVersionInfo);
                geom = new Geometry("createSelectLoadGeomTask", img);
            } else {
                throw new Exception("Unexpected versioninfo type.");
            }
            // pregenerate sampled image, cpu intensive
            geom.precomputeAll(new GeometryThumbnailImageFactoryAWT());
            hashTable.put(GEOMETRY_KEY, geom);
        }
    };
    return selectLoadGeomTask;
}

Example 17 with VCImageInfo

use of cbit.image.VCImageInfo in project vcell by virtualcell.

the class DbDriver method getVCInfoContainer.

/**
 * Insert the method's description here.
 * Creation date: (9/24/2003 12:54:32 PM)
 * @return cbit.vcell.modeldb.VCInfoContainer
 */
public static VCInfoContainer getVCInfoContainer(User user, Connection con, DatabaseSyntax dbSyntax) throws SQLException, DataAccessException {
    VCInfoContainer results = null;
    // 
    VCImageInfo[] vcImageInfos = null;
    GeometryInfo[] geometryInfos = null;
    MathModelInfo[] mathModelInfos = null;
    BioModelInfo[] bioModelInfos = null;
    // 
    StringBuffer sql = null;
    String special = null;
    ResultSet rset = null;
    boolean enableSpecial = true;
    boolean enableDistinct = true;
    Statement stmt = con.createStatement();
    try {
        // 
        // BioModelInfos
        // 
        {
            double beginTime = System.currentTimeMillis();
            special = " ORDER BY " + BioModelTable.table.name.getQualifiedColName() + "," + BioModelTable.table.versionBranchID.getQualifiedColName() + "," + BioModelTable.table.versionDate.getQualifiedColName();
            sql = new StringBuffer(BioModelTable.table.getInfoSQL(user, null, (enableSpecial ? special : null), dbSyntax));
            sql.insert(7, Table.SQL_GLOBAL_HINT);
            rset = stmt.executeQuery(sql.toString());
            ArrayList<BioModelInfo> tempInfos = new ArrayList<BioModelInfo>();
            Set<String> distinctV = new HashSet<String>();
            while (rset.next()) {
                BioModelInfo versionInfo = (BioModelInfo) BioModelTable.table.getInfo(rset, con, dbSyntax);
                if (!distinctV.contains(versionInfo.getVersion().getVersionKey().toString())) {
                    tempInfos.add(versionInfo);
                    distinctV.add(versionInfo.getVersion().getVersionKey().toString());
                }
            }
            rset.close();
            if (tempInfos.size() > 0) {
                bioModelInfos = new BioModelInfo[tempInfos.size()];
                tempInfos.toArray(bioModelInfos);
            }
            if (lg.isInfoEnabled()) {
                lg.info("BioModelInfo Time=" + (((double) System.currentTimeMillis() - beginTime) / (double) 1000));
            }
        }
        // 
        // MathModelInfos
        // 
        {
            double beginTime = System.currentTimeMillis();
            special = " ORDER BY " + MathModelTable.table.name.getQualifiedColName() + "," + MathModelTable.table.versionBranchID.getQualifiedColName() + "," + MathModelTable.table.versionDate.getQualifiedColName();
            sql = new StringBuffer(MathModelTable.table.getInfoSQL(user, null, (enableSpecial ? special : null), dbSyntax));
            sql.insert(7, Table.SQL_GLOBAL_HINT);
            rset = stmt.executeQuery(sql.toString());
            ArrayList<MathModelInfo> tempInfos = new ArrayList<MathModelInfo>();
            Set<String> distinctV = new HashSet<String>();
            while (rset.next()) {
                MathModelInfo versionInfo = (MathModelInfo) MathModelTable.table.getInfo(rset, con, dbSyntax);
                if (!distinctV.contains(versionInfo.getVersion().getVersionKey().toString())) {
                    tempInfos.add(versionInfo);
                    distinctV.add(versionInfo.getVersion().getVersionKey().toString());
                }
            }
            rset.close();
            if (tempInfos.size() > 0) {
                mathModelInfos = new MathModelInfo[tempInfos.size()];
                tempInfos.toArray(mathModelInfos);
            }
            if (lg.isInfoEnabled()) {
                lg.info("MathModelInfo Time=" + (((double) System.currentTimeMillis() - beginTime) / (double) 1000));
            }
        }
        // 
        // VCImageInfos
        // 
        {
            double beginTime = System.currentTimeMillis();
            special = " ORDER BY " + ImageTable.table.name.getQualifiedColName() + "," + ImageTable.table.versionBranchID.getQualifiedColName() + "," + ImageTable.table.versionDate.getQualifiedColName();
            sql = new StringBuffer(ImageTable.table.getInfoSQL(user, null, (enableSpecial ? special : null), true, dbSyntax));
            sql.insert(7, Table.SQL_GLOBAL_HINT);
            rset = stmt.executeQuery(sql.toString());
            ArrayList<VCImageInfo> tempInfos = new ArrayList<VCImageInfo>();
            Set<String> distinctV = new HashSet<String>();
            while (rset.next()) {
                VCImageInfo versionInfo = (VCImageInfo) ImageTable.table.getInfo(rset, con, dbSyntax);
                if (!distinctV.contains(versionInfo.getVersion().getVersionKey().toString())) {
                    tempInfos.add(versionInfo);
                    distinctV.add(versionInfo.getVersion().getVersionKey().toString());
                }
            }
            rset.close();
            if (tempInfos.size() > 0) {
                vcImageInfos = new VCImageInfo[tempInfos.size()];
                tempInfos.toArray(vcImageInfos);
            }
            if (lg.isInfoEnabled()) {
                lg.info("ImageInfo Time=" + (((double) System.currentTimeMillis() - beginTime) / (double) 1000));
            }
        }
        // 
        // GeometeryInfos
        // 
        {
            double beginTime = System.currentTimeMillis();
            special = " ORDER BY " + GeometryTable.table.name.getQualifiedColName() + "," + GeometryTable.table.versionBranchID.getQualifiedColName() + "," + GeometryTable.table.versionDate.getQualifiedColName();
            sql = new StringBuffer(GeometryTable.table.getInfoSQL(user, null, (enableSpecial ? special : null), true, dbSyntax));
            sql.insert(7, Table.SQL_GLOBAL_HINT + (enableDistinct ? "DISTINCT " : ""));
            rset = stmt.executeQuery(sql.toString());
            ArrayList<GeometryInfo> tempInfos = new ArrayList<GeometryInfo>();
            Set<String> distinctV = new HashSet<String>();
            while (rset.next()) {
                GeometryInfo versionInfo = (GeometryInfo) GeometryTable.table.getInfo(rset, con);
                if (!distinctV.contains(versionInfo.getVersion().getVersionKey().toString())) {
                    tempInfos.add(versionInfo);
                    distinctV.add(versionInfo.getVersion().getVersionKey().toString());
                }
            }
            rset.close();
            if (tempInfos.size() > 0) {
                geometryInfos = new GeometryInfo[tempInfos.size()];
                tempInfos.toArray(geometryInfos);
            }
            if (lg.isInfoEnabled()) {
                lg.info("GeometryInfo Time=" + (((double) System.currentTimeMillis() - beginTime) / (double) 1000));
            }
        }
    } finally {
        if (stmt != null) {
            stmt.close();
        }
    }
    results = new VCInfoContainer(user, vcImageInfos, geometryInfos, mathModelInfos, bioModelInfos);
    return results;
}