Examples with SimulationJobStatusEvent cbit.rmi.event.SimulationJobStatusEvent used on opensource projects

Example 6 with SimulationJobStatusEvent

use of cbit.rmi.event.SimulationJobStatusEvent in project vcell by virtualcell.

the class HealthService method runsimLoop.

private void runsimLoop() {
    try {
        Thread.sleep(SIMULATION_LOOP_START_DELAY);
    } catch (InterruptedException e1) {
    }
    UserLoginInfo userLoginInfo = new UserLoginInfo(testUserid, testPassword);
    while (true) {
        long id = simStartEvent();
        KeyValue savedBioModelKey = null;
        VCSimulationIdentifier runningSimId = null;
        try {
            RemoteProxyVCellConnectionFactory vcellConnectionFactory = new RemoteProxyVCellConnectionFactory(host, port, userLoginInfo);
            VCellConnection vcellConnection = vcellConnectionFactory.createVCellConnection();
            String vcmlString = IOUtils.toString(getClass().getResourceAsStream("/TestTemplate.vcml"));
            BioModel templateBioModel = XmlHelper.XMLToBioModel(new XMLSource(vcmlString));
            templateBioModel.clearVersion();
            String newBiomodelName = "test_" + System.currentTimeMillis();
            templateBioModel.setName(newBiomodelName);
            // remove all existing simulations from stored template model, and add new one
            while (templateBioModel.getNumSimulations() > 0) {
                templateBioModel.removeSimulation(templateBioModel.getSimulation(0));
            }
            MathMappingCallback callback = new MathMappingCallback() {

                @Override
                public void setProgressFraction(float fractionDone) {
                }

                @Override
                public void setMessage(String message) {
                }

                @Override
                public boolean isInterrupted() {
                    return false;
                }
            };
            templateBioModel.getSimulationContext(0).addNewSimulation("sim", callback, NetworkGenerationRequirements.ComputeFullStandardTimeout);
            BigString vcml = new BigString(XmlHelper.bioModelToXML(templateBioModel));
            String[] independentSims = new String[0];
            BigString savedBioModelVCML = vcellConnection.getUserMetaDbServer().saveBioModelAs(vcml, newBiomodelName, independentSims);
            BioModel savedBioModel = XmlHelper.XMLToBioModel(new XMLSource(savedBioModelVCML.toString()));
            savedBioModelKey = savedBioModel.getVersion().getVersionKey();
            Simulation sim = savedBioModel.getSimulation(0);
            VCSimulationIdentifier vcSimId = new VCSimulationIdentifier(sim.getKey(), sim.getVersion().getOwner());
            long eventTimestamp = System.currentTimeMillis();
            SimulationStatus simStatus = vcellConnection.getSimulationController().startSimulation(vcSimId, 1);
            simSubmitEvent(id, vcSimId);
            runningSimId = vcSimId;
            long startTime_MS = System.currentTimeMillis();
            while (simStatus.isActive()) {
                if ((System.currentTimeMillis() - startTime_MS) > SIMULATION_TIMEOUT) {
                    throw new RuntimeException("simulation took longer than " + SIMULATION_TIMEOUT + " to complete");
                }
                Thread.sleep(1000);
                MessageEvent[] messageEvents = vcellConnection.getMessageEvents();
                if (messageEvents != null) {
                    for (MessageEvent event : messageEvents) {
                        if (event instanceof SimulationJobStatusEvent) {
                            SimulationJobStatusEvent jobEvent = (SimulationJobStatusEvent) event;
                            SimulationJobStatus jobStatus = jobEvent.getJobStatus();
                            VCSimulationIdentifier eventSimId = jobStatus.getVCSimulationIdentifier();
                            if (eventSimId.getOwner().equals(userLoginInfo.getUser()) && eventSimId.getSimulationKey().equals(sim.getKey())) {
                                simStatus = SimulationStatus.updateFromJobEvent(simStatus, jobEvent);
                            }
                        }
                    }
                }
            }
            runningSimId = null;
            if (!simStatus.isCompleted()) {
                throw new RuntimeException("failed: " + simStatus.getDetails());
            }
            simSuccess(id);
        } catch (Throwable e) {
            simFailed(id, e.getMessage());
        } finally {
            // cleanup
            try {
                RemoteProxyVCellConnectionFactory vcellConnectionFactory = new RemoteProxyVCellConnectionFactory(host, port, userLoginInfo);
                VCellConnection vcellConnection = vcellConnectionFactory.createVCellConnection();
                if (runningSimId != null) {
                    try {
                        vcellConnection.getSimulationController().stopSimulation(runningSimId);
                    } catch (Exception e) {
                        e.printStackTrace(System.out);
                    }
                }
                if (savedBioModelKey != null) {
                    vcellConnection.getUserMetaDbServer().deleteBioModel(savedBioModelKey);
                }
            } catch (Exception e) {
                e.printStackTrace(System.out);
            }
        }
        try {
            Thread.sleep(SIMULATION_LOOP_SLEEP);
        } catch (InterruptedException e) {
            e.printStackTrace();
        }
    }
}

Example 7 with SimulationJobStatusEvent

use of cbit.rmi.event.SimulationJobStatusEvent in project vcell by virtualcell.

the class VCMongoMessage method sendClientMessageEventsDelivered.

public static void sendClientMessageEventsDelivered(MessageEvent[] messageEvents, UserLoginInfo userLoginInfo) {
    if (!enabled || messageEvents == null) {
        return;
    }
    for (MessageEvent messageEvent : messageEvents) {
        if (messageEvent instanceof SimulationJobStatusEvent) {
            try {
                Document dbObject = new Document();
                addHeader(dbObject, MongoMessage_msgtype_clientSimStatusDelivered);
                addObject(dbObject, (SimulationJobStatusEvent) messageEvent);
                addObject(dbObject, userLoginInfo);
                VCMongoDbDriver.getInstance().addMessage(new VCMongoMessage(dbObject));
            } catch (Exception e) {
                lg.error(e.getMessage(), e);
            }
        }
    }
}

Example 8 with SimulationJobStatusEvent

use of cbit.rmi.event.SimulationJobStatusEvent in project vcell by virtualcell.

the class SimulationControllerImpl method onServiceControlTopic_StopSimulation.

private void onServiceControlTopic_StopSimulation(VCMessage message) {
    KeyValue simKey = new KeyValue(String.valueOf(message.getLongProperty(MessageConstants.SIMKEY_PROPERTY)));
    int jobIndex = message.getIntProperty(MessageConstants.JOBINDEX_PROPERTY);
    int taskID = message.getIntProperty(MessageConstants.TASKID_PROPERTY);
    try {
        SimulationTaskID simTaskInfo = new SimulationTaskID(simKey, jobIndex, taskID);
        LocalSolverController solverController = solverControllerHash.get(simTaskInfo);
        if (solverController != null) {
            // can only start after updating the database is done
            solverController.stopSimulationJob();
        }
    } catch (Exception e) {
        lg.error(e.getMessage(), e);
        VCSimulationIdentifier vcSimID = new VCSimulationIdentifier(simKey, localVCellConnection.getUserLoginInfo().getUser());
        SimulationJobStatus newJobStatus = new SimulationJobStatus(VCellServerID.getSystemServerID(), vcSimID, jobIndex, null, SchedulerStatus.FAILED, taskID, SimulationMessage.jobFailed(e.getMessage()), null, null);
        SimulationJobStatusEvent event = new SimulationJobStatusEvent(this, Simulation.createSimulationID(simKey), newJobStatus, null, null, vcSimID.getOwner().getName());
        fireSimulationJobStatusEvent(event);
    }
}