Examples with PathwayGraphTool cbit.vcell.client.desktop.biomodel.pathway.PathwayGraphTool used on opensource projects

Example 1 with PathwayGraphTool

use of cbit.vcell.client.desktop.biomodel.pathway.PathwayGraphTool in project vcell by virtualcell.

the class BioModelEditorPathwayDiagramPanel method initialize.

private void initialize() {
    JToolBar layoutToolBar = createToolBar(SwingConstants.HORIZONTAL);
    sourceTextArea = new JTextArea();
    graphPane = new GraphPane();
    pathwayGraphModel = new PathwayGraphModel();
    pathwayGraphModel.addPropertyChangeListener(eventHandler);
    graphPane.setGraphModel(pathwayGraphModel);
    graphPane.addMouseListener(eventHandler);
    graphCartoonTool = new PathwayGraphTool();
    graphCartoonTool.setGraphPane(graphPane);
    graphTabPanel = new JPanel(new BorderLayout());
    graphScrollPane = new JScrollPane(graphPane);
    graphScrollPane.setHorizontalScrollBarPolicy(ScrollPaneConstants.HORIZONTAL_SCROLLBAR_ALWAYS);
    graphScrollPane.setVerticalScrollBarPolicy(ScrollPaneConstants.VERTICAL_SCROLLBAR_ALWAYS);
    graphTabPanel.add(graphScrollPane, BorderLayout.CENTER);
    viewPortStabilizer = new ViewPortStabilizer(graphScrollPane);
    graphTabPanel.add(layoutToolBar, BorderLayout.NORTH);
    sourceTabPanel = new JPanel(new BorderLayout());
    sourceTabPanel.add(new JScrollPane(sourceTextArea), BorderLayout.CENTER);
    treeTabPanel.add(new JScrollPane(biopaxTree), BorderLayout.CENTER);
    pathwayModelTable = new JSortTable();
    pathwayModelTable.getSelectionModel().addListSelectionListener(eventHandler);
    pathwayModelTableModel = new PathwayModelTableModel(pathwayModelTable);
    pathwayModelTable.setModel(pathwayModelTableModel);
    searchTextField = new JTextField();
    searchTextField.putClientProperty("JTextField.variant", "search");
    searchTextField.getDocument().addDocumentListener(eventHandler);
    groupButton = new JButton("Group", new DownArrowIcon());
    groupButton.setHorizontalTextPosition(SwingConstants.LEFT);
    groupButton.addActionListener(eventHandler);
    deleteButton = new JButton("Delete");
    deleteButton.addActionListener(eventHandler);
    physiologyLinkButton = new JButton("Physiology Links", new DownArrowIcon());
    physiologyLinkButton.setHorizontalTextPosition(SwingConstants.LEFT);
    physiologyLinkButton.addActionListener(eventHandler);
    JPanel bottomPanel = new JPanel();
    bottomPanel.setLayout(new GridBagLayout());
    GridBagConstraints gbc = new GridBagConstraints();
    gbc.gridx = 0;
    gbc.gridy = 0;
    gbc.insets = new Insets(4, 4, 4, 4);
    gbc.fill = GridBagConstraints.HORIZONTAL;
    bottomPanel.add(groupButton, gbc);
    gbc = new GridBagConstraints();
    gbc.gridx = 1;
    gbc.gridy = 0;
    gbc.insets = new Insets(4, 4, 4, 4);
    gbc.fill = GridBagConstraints.HORIZONTAL;
    bottomPanel.add(deleteButton, gbc);
    gbc = new GridBagConstraints();
    gbc.gridx = 2;
    gbc.gridy = 0;
    gbc.insets = new Insets(4, 4, 4, 4);
    gbc.fill = GridBagConstraints.HORIZONTAL;
    bottomPanel.add(physiologyLinkButton, gbc);
    gbc = new GridBagConstraints();
    gbc.gridx = 3;
    gbc.gridy = 0;
    gbc.insets = new Insets(4, 20, 4, 4);
    bottomPanel.add(new JLabel("Search "), gbc);
    gbc = new GridBagConstraints();
    gbc.gridx = 4;
    gbc.gridy = 0;
    gbc.weightx = 1.0;
    gbc.insets = new Insets(4, 4, 4, 4);
    gbc.fill = GridBagConstraints.HORIZONTAL;
    bottomPanel.add(searchTextField, gbc);
    tabbedPane = new JTabbedPaneEnhanced();
    pathwayPanelTabs[PathwayPanelTabID.pathway_diagram.ordinal()] = new PathwayPanelTab(PathwayPanelTabID.pathway_diagram, graphTabPanel, VCellIcons.diagramIcon);
    pathwayPanelTabs[PathwayPanelTabID.pathway_objects.ordinal()] = new PathwayPanelTab(PathwayPanelTabID.pathway_objects, pathwayModelTable.getEnclosingScrollPane(), VCellIcons.tableIcon);
    pathwayPanelTabs[PathwayPanelTabID.biopax_summary.ordinal()] = new PathwayPanelTab(PathwayPanelTabID.biopax_summary, sourceTabPanel, VCellIcons.textNotesIcon);
    pathwayPanelTabs[PathwayPanelTabID.biopax_tree.ordinal()] = new PathwayPanelTab(PathwayPanelTabID.biopax_tree, treeTabPanel, VCellIcons.tableIcon);
    tabbedPane.addChangeListener(eventHandler);
    tabbedPane.addChangeListener(eventHandler);
    for (PathwayPanelTab tab : pathwayPanelTabs) {
        tab.getComponent().setBorder(GuiConstants.TAB_PANEL_BORDER);
        tabbedPane.addTab(tab.getName(), tab.getIcon(), tab.getComponent());
    }
    setLayout(new BorderLayout());
    add(tabbedPane, BorderLayout.CENTER);
    add(bottomPanel, BorderLayout.SOUTH);
    pathwayModelTable.getColumnModel().getColumn(PathwayModelTableModel.COLUMN_ENTITY).setCellRenderer(new DefaultScrollTableCellRenderer() {

        @Override
        public Component getTableCellRendererComponent(JTable table, Object value, boolean isSelected, boolean hasFocus, int row, int column) {
            super.getTableCellRendererComponent(table, value, isSelected, hasFocus, row, column);
            // }
            return this;
        }
    });
}