Examples with GeometryInfo cbit.vcell.geometry.GeometryInfo used on opensource projects

Example 41 with GeometryInfo

use of cbit.vcell.geometry.GeometryInfo in project vcell by virtualcell.

the class GeometryDbTreeModel method databaseDelete.

/**
 * @param event cbit.vcell.clientdb.DatabaseEvent
 */
public void databaseDelete(DatabaseEvent databaseEvent) {
    if (databaseEvent.getOldVersionInfo() instanceof GeometryInfo) {
        GeometryInfo removedGeometryInfo = (GeometryInfo) databaseEvent.getOldVersionInfo();
        BioModelNode removedNode = ((BioModelNode) getRoot()).findNodeByUserObject(removedGeometryInfo);
        if (removedNode != null) {
            if (removedNode.getParent() != null && removedNode.getSiblingCount() == 1) {
                // just this one version
                removedNode = (BioModelNode) removedNode.getParent();
            }
            removeNodeFromParent(removedNode);
        }
    }
}

Example 42 with GeometryInfo

use of cbit.vcell.geometry.GeometryInfo in project vcell by virtualcell.

the class PublicationInfoNodeTreeModel method createVersionSubTree.

private BioModelNode createVersionSubTree(BioModelNode publicationsInfoNode) throws DataAccessException {
    BioModelNode versionNode = new BioModelNode("Root", true);
    Object uo = publicationsInfoNode.getUserObject();
    if (!(uo instanceof PublicationInfo)) {
        String title = "PublicationInfo missing";
        publicationNode = new BioModelNode(title, false);
        versionNode.add(publicationNode);
        return versionNode;
    }
    publicationNode = null;
    modelsNode = null;
    PublicationInfo pi = (PublicationInfo) uo;
    publicationNode = new BioModelNode("Publication", true);
    publicationNode.setRenderHint("type", "PublicationsInfo");
    BioModelNode piTitleNode = new BioModelNode(pi, true);
    piTitleNode.setRenderHint("type", "PublicationInfoTitle");
    publicationNode.add(piTitleNode);
    BioModelNode piAuthorsNode = new BioModelNode(pi, false);
    piAuthorsNode.setRenderHint("type", "PublicationInfoAuthors");
    piTitleNode.add(piAuthorsNode);
    BioModelNode piCitationNode = new BioModelNode(pi, false);
    piCitationNode.setRenderHint("type", "PublicationInfoCitation");
    piTitleNode.add(piCitationNode);
    BioModelNode piDoiNode = new BioModelNode(pi, false);
    piDoiNode.setRenderHint("type", "PublicationInfoDoi");
    piTitleNode.add(piDoiNode);
    if (pi.getUrl() != null && !pi.getUrl().isEmpty()) {
        if (pi.getUrl().contains("pubmed") || pi.getUrl().contains("PubMed")) {
            BioModelNode piUrlNode = new BioModelNode(pi, false);
            piUrlNode.setRenderHint("type", "PublicationInfoUrl");
            piTitleNode.add(piUrlNode);
        }
    }
    versionNode.add(publicationNode);
    String name = publicationsInfoNode.getChildCount() > 1 ? "Models" : "Model";
    modelsNode = new BioModelNode(name, true);
    modelsNode.setRenderHint("type", "ModelsList");
    for (int i = 0; i < publicationsInfoNode.getChildCount(); i++) {
        TreeNode child = publicationsInfoNode.getChildAt(i);
        if (!(child instanceof BioModelNode)) {
            versionNode.add(modelsNode);
            return versionNode;
        }
        BioModelNode modelNode = (BioModelNode) child;
        uo = modelNode.getUserObject();
        if (!(uo instanceof VCDocumentInfoNode)) {
            versionNode.add(modelsNode);
            return versionNode;
        }
        VCDocumentInfoNode din = (VCDocumentInfoNode) uo;
        Version version = din.getVCDocumentInfo().getVersion();
        BioModelNode mNameNode = new BioModelNode(version.getName(), true);
        mNameNode.setRenderHint("type", "ModelName");
        VCDocumentInfo di = din.getVCDocumentInfo();
        if (di instanceof BioModelInfo) {
            mNameNode.setRenderHint("category", "BioModel");
        } else if (di instanceof MathModelInfo) {
            mNameNode.setRenderHint("category", "MathModel");
        } else if (di instanceof GeometryInfo) {
            mNameNode.setRenderHint("category", "Geometry");
        }
        modelsNode.add(mNameNode);
        BioModelNode mOwnerNode = new BioModelNode(version.getOwner(), true);
        mOwnerNode.setRenderHint("type", "ModelOwner");
        mNameNode.add(mOwnerNode);
        BioModelNode mDateNode = new BioModelNode(version.getDate(), true);
        mDateNode.setRenderHint("type", "ModelDate");
        mNameNode.add(mDateNode);
    }
    versionNode.add(modelsNode);
    return versionNode;
}

Example 43 with GeometryInfo

use of cbit.vcell.geometry.GeometryInfo in project vcell by virtualcell.

the class GeometryMetaDataPanel method setGeometryInfo.

/**
 * Sets the geometryInfo property (cbit.vcell.geometry.GeometryInfo) value.
 * @param geometryInfo The new value for the property.
 * @see #getGeometryInfo
 */
public void setGeometryInfo(GeometryInfo geometryInfo) {
    GeometryInfo oldValue = fieldGeometryInfo;
    fieldGeometryInfo = geometryInfo;
    firePropertyChange("geometryInfo", oldValue, geometryInfo);
}

Example 44 with GeometryInfo

use of cbit.vcell.geometry.GeometryInfo in project vcell by virtualcell.

the class GeometryTreePanel method documentManager_DatabaseUpdate.

/**
 * Comment
 */
protected void documentManager_DatabaseUpdate(DatabaseEvent event) {
    if (event.getNewVersionInfo() instanceof GeometryInfo && getSelectedVersionInfo() instanceof GeometryInfo) {
        GeometryInfo selectedGeoInfo = (GeometryInfo) getSelectedVersionInfo();
        GeometryInfo eventGeoInfo = (GeometryInfo) event.getNewVersionInfo();
        if (eventGeoInfo.getVersion().getVersionKey().equals(selectedGeoInfo.getVersion().getVersionKey())) {
            setSelectedVersionInfo(event.getNewVersionInfo());
        }
    }
}

Example 45 with GeometryInfo

use of cbit.vcell.geometry.GeometryInfo in project vcell by virtualcell.

the class GeometryTreePanel method documentManager_DatabaseDelete.

/**
 * Comment
 */
protected void documentManager_DatabaseDelete(DatabaseEvent event) {
    if (event.getOldVersionInfo() instanceof GeometryInfo && getSelectedVersionInfo() instanceof GeometryInfo) {
        GeometryInfo selectedGeoInfo = (GeometryInfo) getSelectedVersionInfo();
        GeometryInfo eventGeoInfo = (GeometryInfo) event.getOldVersionInfo();
        if (eventGeoInfo.getVersion().getVersionKey().equals(selectedGeoInfo.getVersion().getVersionKey())) {
            setSelectedVersionInfo(null);
            getJTree1().getSelectionModel().clearSelection();
        }
    }
}