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Example 6 with FluxReactionShape

use of cbit.vcell.graph.FluxReactionShape in project vcell by virtualcell.

the class ReactionCartoonTool method mouseClicked.

@Override
public void mouseClicked(MouseEvent event) {
    Point screenPoint = new Point(event.getX(), event.getY());
    Point worldPoint = screenToWorld(screenPoint);
    try {
        if (event.getButton() != MouseEvent.BUTTON1) {
            return;
        }
        switch(mode) {
            case SELECT:
                {
                    if (event.getClickCount() == 2) {
                        final Shape selectedShape = getReactionCartoon().getSelectedShape();
                        if (selectedShape instanceof ReactionContainerShape || selectedShape instanceof SpeciesContextShape || selectedShape instanceof SimpleReactionShape || selectedShape instanceof FluxReactionShape || selectedShape instanceof ReactionRuleDiagramShape || selectedShape instanceof RuleParticipantSignatureDiagramShape) {
                            editInPlace(selectedShape, worldPoint);
                        }
                        if (selectedShape != null) {
                            menuAction(selectedShape, CartoonToolMiscActions.Properties.MENU_ACTION);
                        }
                    }
                    break;
                }
            case STEP:
                {
                    Shape pickedShape = getReactionCartoon().pickWorld(worldPoint);
                    if (pickedShape instanceof ReactionContainerShape) {
                        Structure structure = ((ReactionContainerShape) pickedShape).getStructure();
                        if (getReactionCartoon().getStructureSuite().areReactionsShownFor(structure)) {
                            ReactionStep reactionStep = getReactionCartoon().getModel().createSimpleReaction(structure);
                            positionShapeForObject(structure, reactionStep, worldPoint);
                            saveDiagram();
                        }
                    }
                    break;
                }
            case FLUX:
                {
                    Shape pickedShape = getReactionCartoon().pickWorld(worldPoint);
                    if (pickedShape instanceof ReactionContainerShape) {
                        Structure structure = ((ReactionContainerShape) pickedShape).getStructure();
                        if (structure instanceof Membrane) {
                            Membrane membrane = (Membrane) structure;
                            FluxReaction fluxReaction = getReactionCartoon().getModel().createFluxReaction(membrane);
                            ReactionStepShape frShape = (ReactionStepShape) getReactionCartoon().getShapeFromModelObject(fluxReaction);
                            Point parentLocation = frShape.getParent().getSpaceManager().getAbsLoc();
                            frShape.getSpaceManager().setRelPos(worldPoint.x - parentLocation.x, worldPoint.y - parentLocation.y);
                            saveDiagram();
                        // setMode(SELECT_MODE);
                        } else {
                        // setMode(SELECT_MODE);
                        // throw new Exception("fluxes only applicable to membranes");
                        }
                    }
                    break;
                }
            case SPECIES:
                {
                    Shape pickedShape = getReactionCartoon().pickWorld(worldPoint);
                    if (pickedShape instanceof ReactionContainerShape) {
                        SpeciesContext speciesContext = getReactionCartoon().getModel().createSpeciesContext(((ReactionContainerShape) pickedShape).getStructure());
                        reactionCartoon.clearSelection();
                        getGraphModel().select(speciesContext);
                        positionShapeForObject(speciesContext.getStructure(), speciesContext, worldPoint);
                        // showCreateSpeciesContextDialog(getGraphPane(), getReactionCartoon().getModel(), ((ReactionContainerShape) pickedShape).getStructure(), scShapeLocation);
                        saveDiagram();
                    }
                }
            default:
                break;
        }
    } catch (Exception e) {
        System.out.println("CartoonTool.mouseClicked: uncaught exception");
        e.printStackTrace(System.out);
        Point canvasLoc = getGraphPane().getLocationOnScreen();
        canvasLoc.x += screenPoint.x;
        canvasLoc.y += screenPoint.y;
        DialogUtils.showErrorDialog(getGraphPane(), e.getMessage(), e);
    }
}
Also used : SpeciesContextShape(cbit.vcell.graph.SpeciesContextShape) RubberBandRectShape(cbit.gui.graph.RubberBandRectShape) ProductShape(cbit.vcell.graph.ProductShape) ContainerShape(cbit.gui.graph.ContainerShape) CatalystShape(cbit.vcell.graph.CatalystShape) FluxReactionShape(cbit.vcell.graph.FluxReactionShape) ContainerContainerShape(cbit.vcell.graph.ContainerContainerShape) ReactantShape(cbit.vcell.graph.ReactantShape) ElipseShape(cbit.gui.graph.ElipseShape) SimpleReactionShape(cbit.vcell.graph.SimpleReactionShape) ReactionStepShape(cbit.vcell.graph.ReactionStepShape) ReactionContainerShape(cbit.vcell.graph.ReactionContainerShape) Shape(cbit.gui.graph.Shape) RuleParticipantSignatureDiagramShape(cbit.vcell.graph.RuleParticipantSignatureDiagramShape) ReactionRuleDiagramShape(cbit.vcell.graph.ReactionRuleDiagramShape) RubberBandEdgeShape(cbit.gui.graph.RubberBandEdgeShape) ReactionParticipantShape(cbit.vcell.graph.ReactionParticipantShape) ReactionContainerShape(cbit.vcell.graph.ReactionContainerShape) SpeciesContextShape(cbit.vcell.graph.SpeciesContextShape) ReactionRuleDiagramShape(cbit.vcell.graph.ReactionRuleDiagramShape) SimpleReactionShape(cbit.vcell.graph.SimpleReactionShape) FluxReaction(cbit.vcell.model.FluxReaction) Point(java.awt.Point) SpeciesContext(cbit.vcell.model.SpeciesContext) ReactionStepShape(cbit.vcell.graph.ReactionStepShape) PropertyVetoException(java.beans.PropertyVetoException) UtilCancelException(org.vcell.util.UtilCancelException) ExpressionException(cbit.vcell.parser.ExpressionException) UserCancelException(org.vcell.util.UserCancelException) FluxReactionShape(cbit.vcell.graph.FluxReactionShape) ReactionStep(cbit.vcell.model.ReactionStep) Membrane(cbit.vcell.model.Membrane) RuleParticipantSignatureDiagramShape(cbit.vcell.graph.RuleParticipantSignatureDiagramShape) Structure(cbit.vcell.model.Structure)

Aggregations

FluxReactionShape (cbit.vcell.graph.FluxReactionShape)6 ReactionContainerShape (cbit.vcell.graph.ReactionContainerShape)6 ReactionRuleDiagramShape (cbit.vcell.graph.ReactionRuleDiagramShape)6 SimpleReactionShape (cbit.vcell.graph.SimpleReactionShape)6 SpeciesContextShape (cbit.vcell.graph.SpeciesContextShape)6 ContainerShape (cbit.gui.graph.ContainerShape)5 ElipseShape (cbit.gui.graph.ElipseShape)5 RubberBandEdgeShape (cbit.gui.graph.RubberBandEdgeShape)5 RubberBandRectShape (cbit.gui.graph.RubberBandRectShape)5 Shape (cbit.gui.graph.Shape)5 CatalystShape (cbit.vcell.graph.CatalystShape)5 ContainerContainerShape (cbit.vcell.graph.ContainerContainerShape)5 ProductShape (cbit.vcell.graph.ProductShape)5 ReactantShape (cbit.vcell.graph.ReactantShape)5 ReactionParticipantShape (cbit.vcell.graph.ReactionParticipantShape)5 ReactionStepShape (cbit.vcell.graph.ReactionStepShape)5 RuleParticipantSignatureDiagramShape (cbit.vcell.graph.RuleParticipantSignatureDiagramShape)5 ReactionStep (cbit.vcell.model.ReactionStep)5 Point (java.awt.Point)5 ReactionParticipant (cbit.vcell.model.ReactionParticipant)4