Examples with MembraneShape cbit.vcell.graph.MembraneShape used on opensource projects

Example 1 with MembraneShape

use of cbit.vcell.graph.MembraneShape in project vcell by virtualcell.

the class GraphContainerLayoutVCellClassical method refreshLayoutChildrenMembraneShape.

public void refreshLayoutChildrenMembraneShape(MembraneShape shape) {
    // this is like a row/column layout  (1 column)
    // find featureShape child
    FeatureShape featureShape = null;
    for (Shape child : shape.getChildren()) {
        if (child instanceof FeatureShape) {
            featureShape = (FeatureShape) child;
        }
    }
    // calculate total height of all children (not including label)
    // position featureShape (and label)
    int centerX = shape.getSpaceManager().getSize().width / 2;
    int currentY = MembraneShape.memSpacingY;
    if (featureShape != null) {
        featureShape.getSpaceManager().setRelPos(centerX - featureShape.getSpaceManager().getSize().width / 2, currentY);
        currentY += featureShape.getSpaceManager().getSize().height + MembraneShape.memSpacingY;
    }
    // position speciesContextShapes
    // angle = 0 at north pole and increases counter clockwise
    int numSpeciesContexts = shape.countChildren() - 1;
    if (numSpeciesContexts > 0) {
        double deltaAngle = MembraneShape.TotalAngle / (numSpeciesContexts + 1);
        double currentAngle = MembraneShape.BeginAngle + deltaAngle;
        for (Shape child : shape.getChildren()) {
            if (child instanceof SpeciesContextShape) {
                child.getSpaceManager().setRelPos(shape.getRadialPosition(currentAngle));
                currentAngle = (currentAngle + deltaAngle) % (2 * Math.PI);
            }
        }
    }
}