Examples with ReactionRuleDiagramShape cbit.vcell.graph.ReactionRuleDiagramShape used on opensource projects

Example 6 with ReactionRuleDiagramShape

use of cbit.vcell.graph.ReactionRuleDiagramShape in project vcell by virtualcell.

the class ReactionCartoonTool method shapeHasMenuAction.

@Override
public boolean shapeHasMenuAction(Shape shape, String menuAction) {
    if (menuAction.equals(CartoonToolMiscActions.Annotate.MENU_ACTION)) {
        if (shape instanceof ReactionStepShape) {
            return true;
        }
    }
    if (menuAction.equals(CartoonToolEditActions.Copy.MENU_ACTION)) {
        if (shape instanceof SpeciesContextShape || shape instanceof ReactionStepShape || // rule participants don't make sense without their rule
        shape instanceof RuleParticipantSignatureDiagramShape || shape instanceof ReactionRuleDiagramShape) {
            return true;
        }
    }
    if (/*menuAction.equals(CartoonToolEditActions.Paste.MENU_ACTION)
				|| */
    menuAction.equals(CartoonToolEditActions.PasteNew.MENU_ACTION)) {
        if (shape instanceof ReactionContainerShape) {
            return true;
        }
    }
    if (menuAction.equals(CartoonToolEditActions.Delete.MENU_ACTION)) {
        if (shape instanceof ReactionContainerShape || shape instanceof ReactionStepShape || shape instanceof SpeciesContextShape || shape instanceof ReactantShape || shape instanceof ProductShape || shape instanceof CatalystShape || shape instanceof ReactionRuleDiagramShape || shape instanceof RuleParticipantSignatureDiagramShape) {
            return true;
        }
    }
    if (menuAction.equals(CartoonToolMiscActions.AddSpecies.MENU_ACTION)) {
        if (shape instanceof ReactionContainerShape) {
            return true;
        }
    }
    if (menuAction.equals(CartoonToolMiscActions.SearchReactions.MENU_ACTION)) {
        if (shape instanceof ReactionContainerShape) {
            return true;
        }
    }
    if (menuAction.equals(CartoonToolSaveAsImageActions.MenuAction.MENU_ACTION)) {
        if (shape instanceof ReactionContainerShape) {
            return true;
        }
    }
    if (menuAction.equals(CartoonToolMiscActions.Properties.MENU_ACTION)) {
        if (shape instanceof ReactionStepShape || shape instanceof SpeciesContextShape || shape instanceof ReactantShape || shape instanceof ProductShape || shape instanceof CatalystShape || shape instanceof ReactionContainerShape) {
            return true;
        }
    }
    GraphViewAction paintingAction = ActionUtil.getAction(paintingActions, menuAction);
    if (paintingAction != null) {
        return paintingAction.canBeAppliedToShape(shape);
    }
    GraphViewAction groupAction = ActionUtil.getAction(groupActions, menuAction);
    if (groupAction != null) {
        return groupAction.canBeAppliedToShape(shape);
    }
    return false;
}

Example 7 with ReactionRuleDiagramShape

use of cbit.vcell.graph.ReactionRuleDiagramShape in project vcell by virtualcell.

the class ReactionCartoonTool method mouseClicked.

@Override
public void mouseClicked(MouseEvent event) {
    Point screenPoint = new Point(event.getX(), event.getY());
    Point worldPoint = screenToWorld(screenPoint);
    try {
        if (event.getButton() != MouseEvent.BUTTON1) {
            return;
        }
        switch(mode) {
            case SELECT:
                {
                    if (event.getClickCount() == 2) {
                        final Shape selectedShape = getReactionCartoon().getSelectedShape();
                        if (selectedShape instanceof ReactionContainerShape || selectedShape instanceof SpeciesContextShape || selectedShape instanceof SimpleReactionShape || selectedShape instanceof FluxReactionShape || selectedShape instanceof ReactionRuleDiagramShape || selectedShape instanceof RuleParticipantSignatureDiagramShape) {
                            editInPlace(selectedShape, worldPoint);
                        }
                        if (selectedShape != null) {
                            menuAction(selectedShape, CartoonToolMiscActions.Properties.MENU_ACTION);
                        }
                    }
                    break;
                }
            case STEP:
                {
                    Shape pickedShape = getReactionCartoon().pickWorld(worldPoint);
                    if (pickedShape instanceof ReactionContainerShape) {
                        Structure structure = ((ReactionContainerShape) pickedShape).getStructure();
                        if (getReactionCartoon().getStructureSuite().areReactionsShownFor(structure)) {
                            ReactionStep reactionStep = getReactionCartoon().getModel().createSimpleReaction(structure);
                            positionShapeForObject(structure, reactionStep, worldPoint);
                            saveDiagram();
                        }
                    }
                    break;
                }
            case FLUX:
                {
                    Shape pickedShape = getReactionCartoon().pickWorld(worldPoint);
                    if (pickedShape instanceof ReactionContainerShape) {
                        Structure structure = ((ReactionContainerShape) pickedShape).getStructure();
                        if (structure instanceof Membrane) {
                            Membrane membrane = (Membrane) structure;
                            FluxReaction fluxReaction = getReactionCartoon().getModel().createFluxReaction(membrane);
                            ReactionStepShape frShape = (ReactionStepShape) getReactionCartoon().getShapeFromModelObject(fluxReaction);
                            Point parentLocation = frShape.getParent().getSpaceManager().getAbsLoc();
                            frShape.getSpaceManager().setRelPos(worldPoint.x - parentLocation.x, worldPoint.y - parentLocation.y);
                            saveDiagram();
                        // setMode(SELECT_MODE);
                        } else {
                        // setMode(SELECT_MODE);
                        // throw new Exception("fluxes only applicable to membranes");
                        }
                    }
                    break;
                }
            case SPECIES:
                {
                    Shape pickedShape = getReactionCartoon().pickWorld(worldPoint);
                    if (pickedShape instanceof ReactionContainerShape) {
                        SpeciesContext speciesContext = getReactionCartoon().getModel().createSpeciesContext(((ReactionContainerShape) pickedShape).getStructure());
                        reactionCartoon.clearSelection();
                        getGraphModel().select(speciesContext);
                        positionShapeForObject(speciesContext.getStructure(), speciesContext, worldPoint);
                        // showCreateSpeciesContextDialog(getGraphPane(), getReactionCartoon().getModel(), ((ReactionContainerShape) pickedShape).getStructure(), scShapeLocation);
                        saveDiagram();
                    }
                }
            default:
                break;
        }
    } catch (Exception e) {
        System.out.println("CartoonTool.mouseClicked: uncaught exception");
        e.printStackTrace(System.out);
        Point canvasLoc = getGraphPane().getLocationOnScreen();
        canvasLoc.x += screenPoint.x;
        canvasLoc.y += screenPoint.y;
        DialogUtils.showErrorDialog(getGraphPane(), e.getMessage(), e);
    }
}