Examples with ReactionRuleParticipant cbit.vcell.model.ReactionRuleParticipant used on opensource projects

Example 6 with ReactionRuleParticipant

use of cbit.vcell.model.ReactionRuleParticipant in project vcell by virtualcell.

the class ReactionRulePropertiesTreeModel method populateTree.

public void populateTree() {
    if (reactionRule == null) {
        // this may be legit, for example when there's a plain reaction rather than a reaction rule
        System.out.println("ReactionRulePropertiesTreeModel: reactionRule is null.");
        return;
    }
    if (bioModel == null) {
        System.out.println("ReactionRulePropertiesTreeModel: bioModel is null.");
        return;
    }
    rootNode.setUserObject(reactionRule);
    rootNode.removeAllChildren();
    int count = 0;
    List<? extends ReactionRuleParticipant> patterns = participantType == ReactionRuleParticipantType.Reactant ? reactionRule.getReactantPatterns() : reactionRule.getProductPatterns();
    for (ReactionRuleParticipant rrp : patterns) {
        BioModelNode rrNode = new BioModelNode(new ReactionRuleParticipantLocal(participantType, rrp, ++count));
        for (MolecularTypePattern mtp : rrp.getSpeciesPattern().getMolecularTypePatterns()) {
            BioModelNode node = createMolecularTypePatternNode(mtp);
            rrNode.add(node);
        }
        rootNode.add(rrNode);
    }
    nodeStructureChanged(rootNode);
    // GuiUtils.treeExpandAll(ownerTree, rootNode, true);
    GuiUtils.treeExpandAllRows(ownerTree);
    // we fire a dummy event because the species properties panel and the bio model editor species table model
    // will repaint the shape and respectively the table row for any speciesContext property change event
    reactionRule.firePropertyChange("entityChange", null, "bbb");
}

Example 7 with ReactionRuleParticipant

use of cbit.vcell.model.ReactionRuleParticipant in project vcell by virtualcell.

the class ReactionRulePropertiesTreeModel method setReactionRule.

public void setReactionRule(ReactionRule newValue) {
    if (newValue == reactionRule) {
        return;
    }
    ReactionRule oldValue = reactionRule;
    if (oldValue != null) {
        oldValue.removePropertyChangeListener(this);
        List<? extends ReactionRuleParticipant> patterns = participantType == ReactionRuleParticipantType.Reactant ? oldValue.getReactantPatterns() : oldValue.getProductPatterns();
        for (ReactionRuleParticipant rrp : patterns) {
            RbmUtils.removePropertyChangeListener(rrp.getSpeciesPattern(), this);
        }
    }
    reactionRule = newValue;
    populateTree();
    if (newValue != null) {
        newValue.addPropertyChangeListener(this);
        List<? extends ReactionRuleParticipant> patterns = participantType == ReactionRuleParticipantType.Reactant ? newValue.getReactantPatterns() : newValue.getProductPatterns();
        for (ReactionRuleParticipant rrp : patterns) {
            RbmUtils.addPropertyChangeListener(rrp.getSpeciesPattern(), this);
        }
    }
}