Examples with ReferenceDataMappingSpec cbit.vcell.modelopt.ReferenceDataMappingSpec used on opensource projects

Example 6 with ReferenceDataMappingSpec

use of cbit.vcell.modelopt.ReferenceDataMappingSpec in project vcell by virtualcell.

the class ParameterEstimationPanel method mapButton_ActionPerformed.

/**
 * Comment
 */
private void mapButton_ActionPerformed() {
    if (getParameterEstimationTask() == null) {
        return;
    }
    SymbolTableEntry[] symbolTableEntries = getParameterEstimationTask().getModelOptimizationSpec().calculateTimeDependentModelObjects(getParameterEstimationTask().getModelOptimizationSpec().getSimulationContext());
    java.util.Comparator<SymbolTableEntry> steComparator = new java.util.Comparator<SymbolTableEntry>() {

        private Class<?>[] classOrder = new Class<?>[] { Model.ReservedSymbol.class, SpeciesContext.class, Model.ModelParameter.class, Kinetics.KineticsParameter.class };

        public int compare(SymbolTableEntry ste1, SymbolTableEntry ste2) {
            int ste1Category = 100;
            int ste2Category = 100;
            for (int i = 0; i < classOrder.length; i++) {
                if (ste1.getClass().equals(classOrder[i])) {
                    ste1Category = i;
                }
                if (ste2.getClass().equals(classOrder[i])) {
                    ste2Category = i;
                }
            }
            if (ste1Category < ste2Category) {
                return 1;
            } else if (ste1Category > ste2Category) {
                return -1;
            } else {
                return ste1.getName().compareTo(ste2.getName());
            }
        }
    };
    java.util.Arrays.sort(symbolTableEntries, steComparator);
    SymbolTableEntry ste = (SymbolTableEntry) DialogUtils.showListDialog(this, symbolTableEntries, "Map Experimental Data", new SymbolTableEntryListCellRenderer());
    if (ste != null && getDataModelMappingTable().getSelectionModel().getMaxSelectionIndex() >= 0) {
        ReferenceDataMappingSpec refDataMappingSpec = getParameterEstimationTask().getModelOptimizationSpec().getReferenceDataMappingSpecs()[getDataModelMappingTable().getSelectionModel().getMaxSelectionIndex()];
        try {
            refDataMappingSpec.setModelObject(ste);
        } catch (java.beans.PropertyVetoException e) {
            e.printStackTrace(System.out);
            DialogUtils.showErrorDialog(this, e.getMessage());
        }
    }
    return;
}