Examples with DataSetIdentifier cbit.vcell.simdata.DataSetIdentifier used on opensource projects

Example 1 with DataSetIdentifier

use of cbit.vcell.simdata.DataSetIdentifier in project vcell by virtualcell.

the class ChomboSimpleDataViewer method retrieveTimePlot.

private void retrieveTimePlot() {
    if (solTable.getSelectedRow() < 0 || varList.getSelectedIndex() < 0) {
        return;
    }
    final int index = (Integer) solTable.getValueAt(solTable.getSelectedRow(), SolTableModel.COL_INDEX);
    DataSetIdentifier selectedVar = (DataSetIdentifier) varList.getSelectedValue();
    final String varName = selectedVar.getName();
    AsynchClientTask task0 = new AsynchClientTask("clear", AsynchClientTask.TASKTYPE_SWING_BLOCKING) {

        @Override
        public void run(Hashtable<String, Object> hashTable) throws Exception {
            timePlotTableModel.setTimesAndValues(new double[0], new double[0]);
        }
    };
    AsynchClientTask task1 = new AsynchClientTask("retrieve data", AsynchClientTask.TASKTYPE_NONSWING_BLOCKING) {

        @Override
        public void run(Hashtable<String, Object> hashTable) throws Exception {
            double[] times = simData.getDataTimes();
            double[] values = new double[times.length];
            for (int i = 0; i < times.length; ++i) {
                SimDataSet simDataBlock = simData.retrieveSimDataSet(times[i], varName);
                values[i] = simDataBlock.solValues[index];
            }
            hashTable.put("values", values);
        }
    };
    AsynchClientTask task2 = new AsynchClientTask("show data", AsynchClientTask.TASKTYPE_SWING_BLOCKING) {

        @Override
        public void run(Hashtable<String, Object> hashTable) throws Exception {
            timePlotLabel.setText("Varaible " + varName + " @ Index " + index);
            double[] times = simData.getDataTimes();
            double[] values = (double[]) hashTable.get("values");
            timePlotTableModel.setTimesAndValues(times, values);
            dataTabbedPane.setSelectedComponent(timePlotPanel);
        }
    };
    ClientTaskDispatcher.dispatch(this, new Hashtable<String, Object>(), new AsynchClientTask[] { task0, task1, task2 }, false);
}

Example 2 with DataSetIdentifier

use of cbit.vcell.simdata.DataSetIdentifier in project vcell by virtualcell.

the class ChomboSimpleDataViewer method retrieveData.

// private void readMeshMetricsFile(File userDir, VCSimulationDataIdentifier vcDataId, String simId) throws IOException
// {
// File meshMetricsFile = new File(userDir, vcDataId.getID() + ".chombo.memmetrics");
// if (!meshMetricsFile.exists())
// {
// return;
// }
// BufferedReader br = null;
// try
// {
// br = new BufferedReader(new FileReader(meshMetricsFile));
// List<String> cols = new ArrayList<String>();
// List<double[]> values = new ArrayList<double[]>();
// String line = br.readLine();
// if (line != null)
// {
// StringTokenizer st = new StringTokenizer(line, ",");
// while (st.hasMoreTokens())
// {
// String token = st.nextToken();
// cols.add(token);
// }
// }
// while (true)
// {
// line = br.readLine();
// if (line == null)
// {
// break;
// }
// double[] dvalues = new double[cols.size()];
// StringTokenizer st = new StringTokenizer(line, ",");
// int cnt = 0;
// while (st.hasMoreTokens())
// {
// String token = st.nextToken();
// dvalues[cnt] = Double.parseDouble(token);
// ++ cnt;
// }
// assert cnt == cols.size();
// values.add(dvalues);
// }
// meshMetricsTableModel.setData(cols, values);
// }
// finally
// {
// if (br != null)
// {
// br.close();
// }
// }
// }
private void retrieveData() {
    final Double time = (Double) timeComboBox.getSelectedItem();
    if (time == null) {
        return;
    }
    DataSetIdentifier selectedVar = (DataSetIdentifier) varList.getSelectedValue();
    if (selectedVar == null) {
        return;
    }
    final String varName = selectedVar.getName();
    AsynchClientTask task0 = new AsynchClientTask("clear", AsynchClientTask.TASKTYPE_SWING_BLOCKING) {

        @Override
        public void run(Hashtable<String, Object> hashTable) throws Exception {
            solTableModel.clear();
            timePlotTableModel.clear();
            solLabel.setText("Solution");
            timePlotLabel.setText("Time Plot");
            meanTextField.setText(null);
            maxErrorTextField.setText(null);
            sumVolFracTextField.setText(null);
            l2ErrorTextField.setText(null);
        }
    };
    AsynchClientTask task1 = new AsynchClientTask("retrieve data", AsynchClientTask.TASKTYPE_NONSWING_BLOCKING) {

        @Override
        public void run(Hashtable<String, Object> hashTable) throws Exception {
            if (timeComboBox.getSelectedIndex() < 0 || varList.getSelectedIndex() < 0) {
                return;
            }
            SimDataSet simDataSet = simData.retrieveSimDataSet(time, varName);
            hashTable.put("simDataSet", simDataSet);
        }
    };
    AsynchClientTask task2 = new AsynchClientTask("show data", AsynchClientTask.TASKTYPE_SWING_BLOCKING) {

        @Override
        public void run(Hashtable<String, Object> hashTable) throws Exception {
            SimDataSet simDataSet = (SimDataSet) hashTable.get("simDataSet");
            if (simDataSet == null) {
                return;
            }
            solLabel.setText("Variable " + varName + " @ Time " + time);
            solTableModel.setValues(simDataSet.solValues);
            meanTextField.setText(simDataSet.mean == null ? "" : simDataSet.mean.toString());
            sumVolFracTextField.setText(simDataSet.sumVolFrac == null ? "" : simDataSet.sumVolFrac.toString());
            maxErrorTextField.setText(simDataSet.maxError == null ? "" : simDataSet.maxError.toString());
            l2ErrorTextField.setText(simDataSet.l2Error == null ? "" : simDataSet.l2Error + "".toString());
        }
    };
    ClientTaskDispatcher.dispatch(this, new Hashtable<String, Object>(), new AsynchClientTask[] { task0, task1, task2 }, false);
}

Example 3 with DataSetIdentifier

use of cbit.vcell.simdata.DataSetIdentifier in project vcell by virtualcell.

the class ChomboSimpleDataViewer method retrieveVariablesAndTimes.

private void retrieveVariablesAndTimes() {
    AsynchClientTask task0 = new AsynchClientTask("clear", AsynchClientTask.TASKTYPE_SWING_BLOCKING) {

        @Override
        public void run(Hashtable<String, Object> hashTable) throws Exception {
            DefaultComboBoxModel dcm = new DefaultComboBoxModel();
            timeComboBox.setModel(dcm);
            DefaultListModel dlm = new DefaultListModel();
            varList.setModel(dlm);
            solTableModel.clear();
            meshMetricsTableModel.clear();
            meanTextField.setText(null);
            maxErrorTextField.setText(null);
            sumVolFracTextField.setText(null);
            l2ErrorTextField.setText(null);
        }
    };
    AsynchClientTask task1 = new AsynchClientTask("retrieve data", AsynchClientTask.TASKTYPE_NONSWING_BLOCKING) {

        @Override
        public void run(Hashtable<String, Object> hashTable) throws Exception {
            String simId = simIdField.getText().trim();
            if (simId == null || simId.length() == 0) {
                throw new RuntimeException("Please provide a simulation id.");
            }
            String username = userNameTextField.getText().trim();
            if (username == null || username.length() == 0) {
                throw new RuntimeException("Please provide a user name.");
            }
            VCSimulationDataIdentifier vcDataId = new VCSimulationDataIdentifier(new VCSimulationIdentifier(new KeyValue(simId), new User(username, null)), 0);
            SimDataInfoHolder simDataInfoHolder = null;
            String datadir = dataDirTextField.getText();
            if (datadir == null || datadir.length() == 0) {
                simDataInfoHolder = createSimulationDataFromRemote(username, vcDataId);
                datadir = simDataInfoHolder.userDir.getParent();
                dataDirTextField.setText(datadir);
            } else {
                simDataInfoHolder = createSimulationDataFromDir(new File(datadir), username, vcDataId);
            }
            simData = simDataInfoHolder.simData;
            simData.readVarAndFunctionDataIdentifiers();
            usernames.add(username);
            userNameTextField.setAutoCompletionWords(usernames);
            datadirs.add(datadir);
            dataDirTextField.setAutoCompletionWords(datadirs);
            simIds.add(simId);
            simIdField.setAutoCompletionWords(simIds);
        }
    };
    AsynchClientTask task2 = new AsynchClientTask("show data", AsynchClientTask.TASKTYPE_SWING_BLOCKING) {

        @Override
        public void run(Hashtable<String, Object> hashTable) throws Exception {
            double[] times = simData.getDataTimes();
            DefaultComboBoxModel dcm = new DefaultComboBoxModel();
            for (double t : times) {
                dcm.addElement(t);
            }
            timeComboBox.setModel(dcm);
            meshMetricsTableModel.setData(simData.getChomboMesh().getMetricsColumnNames(), simData.getChomboMesh().getMetricsNumbers());
            List<DataSetIdentifier> dsiList = simData.getDataSetIdentifiers();
            DefaultListModel dlm = new DefaultListModel();
            for (DataSetIdentifier dsi : dsiList) {
                dlm.addElement(dsi);
            }
            varList.setModel(dlm);
            if (times.length > 0) {
                timeComboBox.setSelectedIndex(0);
            }
            if (dsiList.size() > 0) {
                varList.setSelectedIndex(0);
            }
            meshMetricsTableModel.refreshTable();
        }
    };
    ClientTaskDispatcher.dispatch(this, new Hashtable<String, Object>(), new AsynchClientTask[] { task0, task1, task2 }, false);
}

Example 4 with DataSetIdentifier

use of cbit.vcell.simdata.DataSetIdentifier in project vcell by virtualcell.

the class ChomboSimpleDataViewer method initialize.

private void initialize() {
    setSize(1000, 500);
    BeanUtils.centerOnScreen(this);
    solTable.setModel(solTableModel);
    solTable.setDefaultRenderer(Number.class, new SolTableCellRenderer());
    meshMetricsTable.setModel(meshMetricsTableModel);
    timePlotTable.setModel(timePlotTableModel);
    varList.setSelectionMode(ListSelectionModel.SINGLE_SELECTION);
    mainPanel.setLayout(new GridBagLayout());
    JPanel meshMetricsPanel = new JPanel(new BorderLayout());
    meshMetricsPanel.add(new JScrollPane(meshMetricsTable), BorderLayout.CENTER);
    dataTabbedPane.addTab("Solution", createSolPanel());
    dataTabbedPane.addTab("Mesh Metrics", meshMetricsPanel);
    dataTabbedPane.addTab("Time Plot", createTimePlotPanel());
    int gridy = 0;
    GridBagConstraints gbc = new GridBagConstraints();
    gbc.gridx = 0;
    gbc.gridy = gridy;
    gbc.weightx = 0.4;
    gbc.fill = GridBagConstraints.HORIZONTAL;
    gbc.insets = new Insets(2, 2, 2, 2);
    mainPanel.add(createInputPanel(), gbc);
    gbc = new GridBagConstraints();
    gbc.gridx = 1;
    gbc.gridy = gridy;
    gbc.gridwidth = GridBagConstraints.REMAINDER;
    gbc.gridheight = GridBagConstraints.REMAINDER;
    gbc.weightx = 1.0;
    gbc.weighty = 1.0;
    gbc.insets = new Insets(2, 2, 2, 2);
    gbc.fill = GridBagConstraints.BOTH;
    mainPanel.add(dataTabbedPane, gbc);
    gridy++;
    gbc = new GridBagConstraints();
    gbc.gridx = 0;
    gbc.gridy = gridy;
    gbc.insets = new Insets(2, 2, 2, 2);
    gbc.fill = GridBagConstraints.BOTH;
    gbc.weighty = 1.0;
    gbc.weightx = 0.2;
    mainPanel.add(createSelectionPanel(), gbc);
    gridy++;
    gbc = new GridBagConstraints();
    gbc.gridx = 0;
    gbc.gridy = gridy;
    gbc.insets = new Insets(2, 2, 20, 20);
    gbc.anchor = GridBagConstraints.LINE_END;
    mainPanel.add(exitButton, gbc);
    add(mainPanel);
    reset();
    resetButton.addActionListener(listener);
    okButton.addActionListener(listener);
    timeComboBox.addActionListener(listener);
    exitButton.addActionListener(listener);
    varList.addListSelectionListener(listener);
    timePlotButton.setEnabled(false);
    timePlotButton.addActionListener(listener);
    solTable.getSelectionModel().addListSelectionListener(listener);
    dataDirTextField.addMouseListener(new MouseAdapter() {

        @Override
        public void mouseEntered(MouseEvent e) {
            dataDirTextField.setToolTipText(dataDirTextField.getText());
        }
    });
    varList.setCellRenderer(new DefaultListCellRenderer() {

        @Override
        public Component getListCellRendererComponent(JList list, Object value, int index, boolean isSelected, boolean cellHasFocus) {
            super.getListCellRendererComponent(list, value, index, isSelected, cellHasFocus);
            if (value instanceof DataSetIdentifier) {
                setText(((DataSetIdentifier) value).getName());
            }
            return this;
        }
    });
}