Examples with SimDataSet cbit.vcell.simdata.SimulationDataSpatialHdf5.SimDataSet used on opensource projects

Example 1 with SimDataSet

use of cbit.vcell.simdata.SimulationDataSpatialHdf5.SimDataSet in project vcell by virtualcell.

the class ChomboSimpleDataViewer method retrieveTimePlot.

private void retrieveTimePlot() {
    if (solTable.getSelectedRow() < 0 || varList.getSelectedIndex() < 0) {
        return;
    }
    final int index = (Integer) solTable.getValueAt(solTable.getSelectedRow(), SolTableModel.COL_INDEX);
    DataSetIdentifier selectedVar = (DataSetIdentifier) varList.getSelectedValue();
    final String varName = selectedVar.getName();
    AsynchClientTask task0 = new AsynchClientTask("clear", AsynchClientTask.TASKTYPE_SWING_BLOCKING) {

        @Override
        public void run(Hashtable<String, Object> hashTable) throws Exception {
            timePlotTableModel.setTimesAndValues(new double[0], new double[0]);
        }
    };
    AsynchClientTask task1 = new AsynchClientTask("retrieve data", AsynchClientTask.TASKTYPE_NONSWING_BLOCKING) {

        @Override
        public void run(Hashtable<String, Object> hashTable) throws Exception {
            double[] times = simData.getDataTimes();
            double[] values = new double[times.length];
            for (int i = 0; i < times.length; ++i) {
                SimDataSet simDataBlock = simData.retrieveSimDataSet(times[i], varName);
                values[i] = simDataBlock.solValues[index];
            }
            hashTable.put("values", values);
        }
    };
    AsynchClientTask task2 = new AsynchClientTask("show data", AsynchClientTask.TASKTYPE_SWING_BLOCKING) {

        @Override
        public void run(Hashtable<String, Object> hashTable) throws Exception {
            timePlotLabel.setText("Varaible " + varName + " @ Index " + index);
            double[] times = simData.getDataTimes();
            double[] values = (double[]) hashTable.get("values");
            timePlotTableModel.setTimesAndValues(times, values);
            dataTabbedPane.setSelectedComponent(timePlotPanel);
        }
    };
    ClientTaskDispatcher.dispatch(this, new Hashtable<String, Object>(), new AsynchClientTask[] { task0, task1, task2 }, false);
}

Example 2 with SimDataSet

use of cbit.vcell.simdata.SimulationDataSpatialHdf5.SimDataSet in project vcell by virtualcell.

the class ChomboSimpleDataViewer method retrieveData.

// private void readMeshMetricsFile(File userDir, VCSimulationDataIdentifier vcDataId, String simId) throws IOException
// {
// File meshMetricsFile = new File(userDir, vcDataId.getID() + ".chombo.memmetrics");
// if (!meshMetricsFile.exists())
// {
// return;
// }
// BufferedReader br = null;
// try
// {
// br = new BufferedReader(new FileReader(meshMetricsFile));
// List<String> cols = new ArrayList<String>();
// List<double[]> values = new ArrayList<double[]>();
// String line = br.readLine();
// if (line != null)
// {
// StringTokenizer st = new StringTokenizer(line, ",");
// while (st.hasMoreTokens())
// {
// String token = st.nextToken();
// cols.add(token);
// }
// }
// while (true)
// {
// line = br.readLine();
// if (line == null)
// {
// break;
// }
// double[] dvalues = new double[cols.size()];
// StringTokenizer st = new StringTokenizer(line, ",");
// int cnt = 0;
// while (st.hasMoreTokens())
// {
// String token = st.nextToken();
// dvalues[cnt] = Double.parseDouble(token);
// ++ cnt;
// }
// assert cnt == cols.size();
// values.add(dvalues);
// }
// meshMetricsTableModel.setData(cols, values);
// }
// finally
// {
// if (br != null)
// {
// br.close();
// }
// }
// }
private void retrieveData() {
    final Double time = (Double) timeComboBox.getSelectedItem();
    if (time == null) {
        return;
    }
    DataSetIdentifier selectedVar = (DataSetIdentifier) varList.getSelectedValue();
    if (selectedVar == null) {
        return;
    }
    final String varName = selectedVar.getName();
    AsynchClientTask task0 = new AsynchClientTask("clear", AsynchClientTask.TASKTYPE_SWING_BLOCKING) {

        @Override
        public void run(Hashtable<String, Object> hashTable) throws Exception {
            solTableModel.clear();
            timePlotTableModel.clear();
            solLabel.setText("Solution");
            timePlotLabel.setText("Time Plot");
            meanTextField.setText(null);
            maxErrorTextField.setText(null);
            sumVolFracTextField.setText(null);
            l2ErrorTextField.setText(null);
        }
    };
    AsynchClientTask task1 = new AsynchClientTask("retrieve data", AsynchClientTask.TASKTYPE_NONSWING_BLOCKING) {

        @Override
        public void run(Hashtable<String, Object> hashTable) throws Exception {
            if (timeComboBox.getSelectedIndex() < 0 || varList.getSelectedIndex() < 0) {
                return;
            }
            SimDataSet simDataSet = simData.retrieveSimDataSet(time, varName);
            hashTable.put("simDataSet", simDataSet);
        }
    };
    AsynchClientTask task2 = new AsynchClientTask("show data", AsynchClientTask.TASKTYPE_SWING_BLOCKING) {

        @Override
        public void run(Hashtable<String, Object> hashTable) throws Exception {
            SimDataSet simDataSet = (SimDataSet) hashTable.get("simDataSet");
            if (simDataSet == null) {
                return;
            }
            solLabel.setText("Variable " + varName + " @ Time " + time);
            solTableModel.setValues(simDataSet.solValues);
            meanTextField.setText(simDataSet.mean == null ? "" : simDataSet.mean.toString());
            sumVolFracTextField.setText(simDataSet.sumVolFrac == null ? "" : simDataSet.sumVolFrac.toString());
            maxErrorTextField.setText(simDataSet.maxError == null ? "" : simDataSet.maxError.toString());
            l2ErrorTextField.setText(simDataSet.l2Error == null ? "" : simDataSet.l2Error + "".toString());
        }
    };
    ClientTaskDispatcher.dispatch(this, new Hashtable<String, Object>(), new AsynchClientTask[] { task0, task1, task2 }, false);
}