Examples with AnnotatedFunction cbit.vcell.solver.AnnotatedFunction used on opensource projects

Example 66 with AnnotatedFunction

use of cbit.vcell.solver.AnnotatedFunction in project vcell by virtualcell.

the class OutputFunctionsPanel method addFunction.

private void addFunction() throws Exception {
    String funcName = getFunctionNameTextField().getText();
    Expression funcExp = null;
    funcExp = new Expression(getFunctionExpressionTextField().getText());
    Domain domain = null;
    VariableType newFunctionVariableType = null;
    boolean bSpatial = simulationWorkspace.getSimulationOwner().getGeometry().getDimension() > 0;
    if (bSpatial) {
        Object selectedItem = getSubdomainComboBox().getSelectedItem();
        if (selectedItem instanceof GeometryClass) {
            GeometryClass geoClass = (GeometryClass) selectedItem;
            domain = new Domain(geoClass);
            if (selectedItem instanceof SubVolume) {
                newFunctionVariableType = VariableType.VOLUME;
            } else if (selectedItem instanceof SurfaceClass) {
                newFunctionVariableType = VariableType.MEMBRANE;
            }
        } else if (selectedItem instanceof VariableType) {
            newFunctionVariableType = (VariableType) selectedItem;
        } else {
            newFunctionVariableType = VariableType.UNKNOWN;
        }
    } else {
        newFunctionVariableType = VariableType.NONSPATIAL;
    }
    AnnotatedFunction tempFunction = new AnnotatedFunction(funcName, funcExp, domain, null, newFunctionVariableType, FunctionCategory.OUTPUTFUNCTION);
    VariableType vt = outputFunctionContext.computeFunctionTypeWRTExpression(tempFunction, funcExp);
    FunctionCategory category = FunctionCategory.OUTPUTFUNCTION;
    if (vt.equals(VariableType.POSTPROCESSING)) {
        category = FunctionCategory.POSTPROCESSFUNCTION;
    }
    AnnotatedFunction newFunction = new AnnotatedFunction(funcName, funcExp, domain, null, vt, category);
    outputFunctionContext.addOutputFunction(newFunction);
    setSelectedObjects(new Object[] { newFunction });
    enableDeleteFnButton();
}

Example 67 with AnnotatedFunction

use of cbit.vcell.solver.AnnotatedFunction in project vcell by virtualcell.

the class OutputFunctionsListTableModel method setValueAt.

/**
 * Insert the method's description here.
 * Creation date: (7/12/2004 2:01:23 PM)
 * @param aValue java.lang.Object
 * @param rowIndex int
 * @param columnIndex int
 */
public void setValueAt(Object aValue, int rowIndex, int columnIndex) {
    AnnotatedFunction outputFunction = getValueAt(rowIndex);
    switch(columnIndex) {
        case COLUMN_OUTPUTFN_EXPRESSION:
            {
                try {
                    Expression exp = new Expression((String) aValue);
                    if (exp.compareEqual(outputFunction.getExpression())) {
                        return;
                    }
                    exp.bindExpression(outputFunctionContext);
                    VariableType vt = outputFunctionContext.computeFunctionTypeWRTExpression(outputFunction, exp);
                    if (!vt.compareEqual(outputFunction.getFunctionType())) {
                    }
                    outputFunction.setExpression(exp);
                    fireTableRowsUpdated(rowIndex, rowIndex);
                    outputFunctionContext.firePropertyChange("outputFunctions", null, outputFunctionContext.getOutputFunctionsList());
                } catch (ExpressionException e) {
                    e.printStackTrace(System.out);
                    PopupGenerator.showErrorDialog(ownerTable, "Expression error:\n" + e.getMessage());
                } catch (InconsistentDomainException e) {
                    e.printStackTrace(System.out);
                    PopupGenerator.showErrorDialog(ownerTable, "Expression error:\n" + e.getMessage());
                }
                break;
            }
        case COLUMN_OUTPUTFN_VARIABLETYPE:
            {
                for (int i = 0; i < availableGeometryClasses.length; i++) {
                    if (availableGeometryClasses[i].getName().equals(aValue)) {
                        Domain newDomain = new Domain(availableGeometryClasses[i]);
                        outputFunction.setDomain(newDomain);
                        fireTableRowsUpdated(rowIndex, rowIndex);
                        outputFunctionContext.firePropertyChange("outputFunctions", null, outputFunctionContext.getOutputFunctionsList());
                        break;
                    }
                }
                break;
            }
    }
}

Example 68 with AnnotatedFunction

use of cbit.vcell.solver.AnnotatedFunction in project vcell by virtualcell.

the class OutputFunctionsPanel method deleteOutputFunction.

private void deleteOutputFunction() {
    if (getSelectedFunction() != null) {
        AnnotatedFunction function = getSelectedFunction();
        String confirm = PopupGenerator.showOKCancelWarningDialog(this, "Deleting Output Function", "You are going to delete the Output Function '" + function.getName() + "'. Continue?");
        if (confirm.equals(UserMessage.OPTION_CANCEL)) {
            return;
        }
        try {
            outputFunctionContext.removeOutputFunction(function);
        } catch (PropertyVetoException e1) {
            e1.printStackTrace(System.out);
            DialogUtils.showErrorDialog(this, " Deletion of function '" + function.getName() + "' failed." + e1.getMessage());
        }
    }
    enableDeleteFnButton();
}