Examples with SolverDescription cbit.vcell.solver.SolverDescription used on opensource projects

Example 11 with SolverDescription

use of cbit.vcell.solver.SolverDescription in project vcell by virtualcell.

the class SimulationListPanel method quickRun.

/*
	private void particleView() {
		int row = getScrollPaneTable().getSelectedRow();
		if (row < 0) {
			return;
		}
		Simulation selectedSim = getSimulationListTableModel1().getValueAt(row);
		getSimulationWorkspace().getClientSimManager().runSmoldynParticleView(selectedSim);
	}
	*/
private void quickRun(ViewerType viewerType) {
    int row = getScrollPaneTable().getSelectedRow();
    if (row < 0) {
        return;
    }
    activateConsole();
    Simulation selectedSim = getSimulationListTableModel1().getValueAt(row);
    SolverDescription solverDescription = selectedSim.getSolverTaskDescription().getSolverDescription();
    if (solverDescription.equals(SolverDescription.FiniteVolume)) {
        if (getSimulationWorkspace().getSimulationOwner() instanceof SimulationContext) {
            String option = DialogUtils.showOKCancelWarningDialog(SimulationListPanel.this, "Deprecated Solver", VCellErrorMessages.getSemiFVSolverCompiledSolverDeprecated(selectedSim));
            if (option.equals(SimpleUserMessage.OPTION_CANCEL)) {
                return;
            }
            try {
                selectedSim.getSolverTaskDescription().setSolverDescription(SolverDescription.FiniteVolumeStandalone);
                selectedSim.setIsDirty(true);
            } catch (PropertyVetoException e) {
                e.printStackTrace();
            }
        }
    }
    getSimulationWorkspace().getClientSimManager().runQuickSimulation(selectedSim, viewerType);
}

Example 12 with SolverDescription

use of cbit.vcell.solver.SolverDescription in project vcell by virtualcell.

the class DataProcessingInstructionPanel method refresh.

private void refresh() {
    if (solverTaskDescription == null) {
        return;
    }
    SolverDescription solverDesc = solverTaskDescription.getSolverDescription();
    if (solverDesc.supports(SolverFeature.Feature_DataProcessingInstructions)) {
        setVisible(true);
        DataProcessingInstructions dpi = solverTaskDescription.getSimulation().getDataProcessingInstructions();
        if (dpi != null) {
            dataProcessorCheckBox.setSelected(true);
            editDataProcessorButton.setEnabled(true);
        } else {
            editDataProcessorButton.setEnabled(false);
        }
    } else {
        setVisible(false);
    }
}

Example 13 with SolverDescription

use of cbit.vcell.solver.SolverDescription in project vcell by virtualcell.

the class SolverTaskDescriptionAdvancedPanel method createSolverComboBoxModel.

/**
 * Gets the solverTaskDescription property (cbit.vcell.solver.SolverTaskDescription) value.
 * @return The solverTaskDescription property value.
 * @see #setSolverTaskDescription
 * new javax.swing.DefaultComboBoxModel()
 */
private javax.swing.DefaultComboBoxModel<String> createSolverComboBoxModel(SolverTaskDescription newSolverTaskDescription) {
    if (fieldSolverComboBoxModel == null) {
        fieldSolverComboBoxModel = new DefaultComboBoxModel<String>();
    }
    // remember cuurent solver so we can put it back as the selected one after creating the list
    // otherwise, iterating while adding elements will fire events that will change it on the TornoffSolverTaskDescription...
    SolverDescription currentSolverDescription = null;
    if (newSolverTaskDescription != null && newSolverTaskDescription.getSolverDescription() != null) {
        currentSolverDescription = newSolverTaskDescription.getSolverDescription();
    }
    // 
    fieldSolverComboBoxModel.removeAllElements();
    if (getSolverTaskDescription() != null) {
        MathDescription mathDescription = getSolverTaskDescription().getSimulation().getMathDescription();
        for (SolverDescription sd : SolverDescription.getSupportingSolverDescriptions(mathDescription)) {
            if (!sd.deprecated) {
                fieldSolverComboBoxModel.addElement(sd.getDisplayLabel());
            }
        }
    }
    // 
    if (currentSolverDescription != null) {
        fieldSolverComboBoxModel.setSelectedItem(currentSolverDescription.getDisplayLabel());
    }
    return (fieldSolverComboBoxModel);
}

Example 14 with SolverDescription

use of cbit.vcell.solver.SolverDescription in project vcell by virtualcell.

the class SolverTaskDescriptionAdvancedPanel method refresh.

/**
 * Comment
 */
private void refresh() {
    if (getSolverTaskDescription() == null) {
        return;
    }
    SolverDescription solverDescription = getSolverTaskDescription().getSolverDescription();
    if (solverDescription == null) {
        getSolverComboBox().setEnabled(false);
    } else {
        getSolverComboBox().setEnabled(true);
        // 
        if (getSolverComboBox().getSelectedItem() == null || !getSolverComboBox().getSelectedItem().equals(solverDescription.getDisplayLabel())) {
            if (getSolverComboBox().getModel().getSize() > 0) {
                getSolverComboBox().setSelectedItem(solverDescription.getDisplayLabel());
            }
        }
    }
    Set<SolverFeature> supportedFeatures = ivjTornOffSolverTaskDescription.getSolverDescription().getSupportedFeatures();
    if (supportedFeatures.contains(SolverFeature.Feature_SerialParameterScans)) {
        serialParameterScanCheckBox.setVisible(true);
        boolean bSerialParameterScan = ivjTornOffSolverTaskDescription.isSerialParameterScan();
        if (bSerialParameterScan) {
            serialParameterScanCheckBox.setSelected(bSerialParameterScan);
        }
    } else {
        serialParameterScanCheckBox.setVisible(false);
    }
    // sensitivity panel's visibility
    managePanels();
    getMiscPanel().setVisible(supportedFeatures.contains(SolverFeature.Feature_SerialParameterScans) || supportedFeatures.contains(SolverFeature.Feature_StopAtSpatiallyUniform) || supportedFeatures.contains(SolverFeature.Feature_DataProcessingInstructions));
    if (getSolverTaskDescription().getSolverDescription().isChomboSolver()) {
        getTimeBoundsPanel().setVisible(false);
        getTimeStepPanel().setVisible(false);
        getChomboTimeBoundsPanel().setVisible(true);
        getChomboDeveloperToolsPanel().setVisible(true);
    } else {
        getTimeBoundsPanel().setVisible(true);
        getTimeStepPanel().setVisible(true);
        getChomboTimeBoundsPanel().setVisible(false);
        getChomboDeveloperToolsPanel().setVisible(false);
    }
    movingBoundarySolverOptionsPanel.setVisible(getSolverTaskDescription().getSolverDescription().isMovingBoundarySolver());
}

Example 15 with SolverDescription

use of cbit.vcell.solver.SolverDescription in project vcell by virtualcell.

the class ClientSimManager method createQuickRunSolver.

public static Solver createQuickRunSolver(File directory, SimulationTask simTask) throws SolverException, IOException {
    SolverDescription solverDescription = simTask.getSimulation().getSolverTaskDescription().getSolverDescription();
    if (solverDescription == null) {
        throw new IllegalArgumentException("SolverDescription cannot be null");
    }
    // ----- 'FiniteVolume, Regular Grid' solver (semi-implicit) solver is not supported for quick run; throw exception.
    if (solverDescription.equals(SolverDescription.FiniteVolume)) {
        throw new IllegalArgumentException("Semi-Implicit Finite Volume Compiled, Regular Grid (Fixed Time Step) solver not allowed for quick run of simulations.");
    }
    SolverUtilities.prepareSolverExecutable(solverDescription);
    // create solver from SolverFactory
    Solver solver = SolverFactory.createSolver(directory, simTask, false);
    return solver;
}