Examples with VCSimulationIdentifier cbit.vcell.solver.VCSimulationIdentifier used on opensource projects

Example 31 with VCSimulationIdentifier

use of cbit.vcell.solver.VCSimulationIdentifier in project vcell by virtualcell.

the class MathModelWindowManager method checkValidSimulationDataViewerFrames.

/**
 * Insert the method's description here.
 * Creation date: (7/20/2004 1:13:06 PM)
 */
private void checkValidSimulationDataViewerFrames() {
    SimulationWindow[] simWindows = (SimulationWindow[]) BeanUtils.getArray(simulationWindowsHash.elements(), SimulationWindow.class);
    Simulation[] sims = getMathModel().getSimulations();
    Hashtable<VCSimulationIdentifier, Simulation> hash = new Hashtable<VCSimulationIdentifier, Simulation>();
    for (int i = 0; i < sims.length; i++) {
        SimulationInfo simInfo = sims[i].getSimulationInfo();
        if (simInfo != null) {
            VCSimulationIdentifier vcSimulationIdentifier = simInfo.getAuthoritativeVCSimulationIdentifier();
            hash.put(vcSimulationIdentifier, sims[i]);
        }
    }
    for (int i = 0; i < simWindows.length; i++) {
        if (hash.containsKey(simWindows[i].getVcSimulationIdentifier())) {
            simWindows[i].resetSimulation((Simulation) hash.get(simWindows[i].getVcSimulationIdentifier()));
        } else {
            ChildWindowManager childWindowManager = ChildWindowManager.findChildWindowManager(getJPanel());
            ChildWindow childWindow = childWindowManager.getChildWindowFromContext(simWindows[i]);
            if (childWindow != null) {
                childWindow.close();
            }
        }
    }
}

Example 32 with VCSimulationIdentifier

use of cbit.vcell.solver.VCSimulationIdentifier in project vcell by virtualcell.

the class TopLevelWindowManager method prepareDocumentToLoad.

public void prepareDocumentToLoad(VCDocument doc, boolean bInNewWindow) throws Exception {
    if (doc instanceof BioModel) {
        Simulation[] simulations = ((BioModel) doc).getSimulations();
        ArrayList<VCSimulationIdentifier> simIDs = new ArrayList<VCSimulationIdentifier>();
        for (int i = 0; i < simulations.length; i++) {
            SimulationInfo simulationInfo = simulations[i].getSimulationInfo();
            if (simulationInfo != null) {
                simIDs.add(simulationInfo.getAuthoritativeVCSimulationIdentifier());
            }
        }
        RequestManager rm = getRequestManager();
        ConnectionStatus stat = rm.getConnectionStatus();
        if (stat.getStatus() == ConnectionStatus.CONNECTED) {
            rm.getDocumentManager().preloadSimulationStatus(simIDs.toArray(new VCSimulationIdentifier[0]));
        }
    } else if (doc instanceof MathModel) {
        Geometry geometry = ((MathModel) doc).getMathDescription().getGeometry();
        geometry.precomputeAll(new GeometryThumbnailImageFactoryAWT());
        Simulation[] simulations = ((MathModel) doc).getSimulations();
        // VCSimulationIdentifier simIDs[] = new VCSimulationIdentifier[simulations.length];
        ArrayList<VCSimulationIdentifier> simIDs = new ArrayList<>();
        for (int i = 0; i < simulations.length; i++) {
            if (simulations[i].getSimulationInfo() != null) {
                simIDs.add(simulations[i].getSimulationInfo().getAuthoritativeVCSimulationIdentifier());
            }
        }
        getRequestManager().getDocumentManager().preloadSimulationStatus(simIDs.toArray(new VCSimulationIdentifier[0]));
    } else if (doc instanceof Geometry) {
        ((Geometry) doc).precomputeAll(new GeometryThumbnailImageFactoryAWT());
    }
}

Example 33 with VCSimulationIdentifier

use of cbit.vcell.solver.VCSimulationIdentifier in project vcell by virtualcell.

the class ApplicationComponents method cleanSimWindowsHash.

/**
 * Remove server side sim results windows that are no longer in use
 */
public void cleanSimWindowsHash() {
    Iterator<Entry<VCSimulationIdentifier, SimulationWindow>> iter = simulationWindowsHash.entrySet().iterator();
    while (iter.hasNext()) {
        Entry<VCSimulationIdentifier, SimulationWindow> es = iter.next();
        SimulationWindow sw = es.getValue();
        if (!sw.isShowingLocalSimulation()) {
            VCSimulationIdentifier vcsid = es.getKey();
            Simulation[] sims = simulationWorkspace.getSimulations();
            boolean bFound = false;
            for (int i = 0; i < sims.length; i += 1) {
                if (sims[i].getSimulationInfo() != null && sims[i].getSimulationInfo().getAuthoritativeVCSimulationIdentifier().equals(vcsid)) {
                    bFound = true;
                    break;
                }
            }
            if (!bFound) {
                iter.remove();
            }
        }
    }
}

Example 34 with VCSimulationIdentifier

use of cbit.vcell.solver.VCSimulationIdentifier in project vcell by virtualcell.

the class ChomboSimpleDataViewer method retrieveVariablesAndTimes.

private void retrieveVariablesAndTimes() {
    AsynchClientTask task0 = new AsynchClientTask("clear", AsynchClientTask.TASKTYPE_SWING_BLOCKING) {

        @Override
        public void run(Hashtable<String, Object> hashTable) throws Exception {
            DefaultComboBoxModel dcm = new DefaultComboBoxModel();
            timeComboBox.setModel(dcm);
            DefaultListModel dlm = new DefaultListModel();
            varList.setModel(dlm);
            solTableModel.clear();
            meshMetricsTableModel.clear();
            meanTextField.setText(null);
            maxErrorTextField.setText(null);
            sumVolFracTextField.setText(null);
            l2ErrorTextField.setText(null);
        }
    };
    AsynchClientTask task1 = new AsynchClientTask("retrieve data", AsynchClientTask.TASKTYPE_NONSWING_BLOCKING) {

        @Override
        public void run(Hashtable<String, Object> hashTable) throws Exception {
            String simId = simIdField.getText().trim();
            if (simId == null || simId.length() == 0) {
                throw new RuntimeException("Please provide a simulation id.");
            }
            String username = userNameTextField.getText().trim();
            if (username == null || username.length() == 0) {
                throw new RuntimeException("Please provide a user name.");
            }
            VCSimulationDataIdentifier vcDataId = new VCSimulationDataIdentifier(new VCSimulationIdentifier(new KeyValue(simId), new User(username, null)), 0);
            SimDataInfoHolder simDataInfoHolder = null;
            String datadir = dataDirTextField.getText();
            if (datadir == null || datadir.length() == 0) {
                simDataInfoHolder = createSimulationDataFromRemote(username, vcDataId);
                datadir = simDataInfoHolder.userDir.getParent();
                dataDirTextField.setText(datadir);
            } else {
                simDataInfoHolder = createSimulationDataFromDir(new File(datadir), username, vcDataId);
            }
            simData = simDataInfoHolder.simData;
            simData.readVarAndFunctionDataIdentifiers();
            usernames.add(username);
            userNameTextField.setAutoCompletionWords(usernames);
            datadirs.add(datadir);
            dataDirTextField.setAutoCompletionWords(datadirs);
            simIds.add(simId);
            simIdField.setAutoCompletionWords(simIds);
        }
    };
    AsynchClientTask task2 = new AsynchClientTask("show data", AsynchClientTask.TASKTYPE_SWING_BLOCKING) {

        @Override
        public void run(Hashtable<String, Object> hashTable) throws Exception {
            double[] times = simData.getDataTimes();
            DefaultComboBoxModel dcm = new DefaultComboBoxModel();
            for (double t : times) {
                dcm.addElement(t);
            }
            timeComboBox.setModel(dcm);
            meshMetricsTableModel.setData(simData.getChomboMesh().getMetricsColumnNames(), simData.getChomboMesh().getMetricsNumbers());
            List<DataSetIdentifier> dsiList = simData.getDataSetIdentifiers();
            DefaultListModel dlm = new DefaultListModel();
            for (DataSetIdentifier dsi : dsiList) {
                dlm.addElement(dsi);
            }
            varList.setModel(dlm);
            if (times.length > 0) {
                timeComboBox.setSelectedIndex(0);
            }
            if (dsiList.size() > 0) {
                varList.setSelectedIndex(0);
            }
            meshMetricsTableModel.refreshTable();
        }
    };
    ClientTaskDispatcher.dispatch(this, new Hashtable<String, Object>(), new AsynchClientTask[] { task0, task1, task2 }, false);
}

Example 35 with VCSimulationIdentifier

use of cbit.vcell.solver.VCSimulationIdentifier in project vcell by virtualcell.

the class VCellClientDataServiceImpl method getVCSimulationDataIdentifier.

public VCSimulationDataIdentifier getVCSimulationDataIdentifier(SimulationDataSetRef simulationDataSetRef) throws FileNotFoundException {
    User user = new User(simulationDataSetRef.getUsername(), new KeyValue(simulationDataSetRef.getUserkey()));
    KeyValue simKeyValue = new KeyValue(simulationDataSetRef.getSimId());
    VCSimulationIdentifier vcSimulationIdentifier = new VCSimulationIdentifier(simKeyValue, user);
    if (simulationDataSetRef.isIsLocal()) {
        File primaryDir = ResourceUtil.getLocalRootDir();
        DataSetControllerImpl dataSetControllerImpl = new DataSetControllerImpl(null, primaryDir, null);
        ExportServiceImpl localExportServiceImpl = new ExportServiceImpl();
        LocalDataSetControllerProvider localDSCProvider = new LocalDataSetControllerProvider(user, dataSetControllerImpl, localExportServiceImpl);
        VCDataManager vcDataManager = new VCDataManager(localDSCProvider);
        File localSimDir = ResourceUtil.getLocalSimDir(User.tempUser.getName());
        VCSimulationDataIdentifier simulationDataIdentifier = new LocalVCSimulationDataIdentifier(vcSimulationIdentifier, 0, localSimDir);
        return simulationDataIdentifier;
    } else {
        VCSimulationDataIdentifier vcSimulationDataIdentifier = new VCSimulationDataIdentifier(vcSimulationIdentifier, simulationDataSetRef.getJobIndex());
        return vcSimulationDataIdentifier;
    }
}