Examples with MembraneElement cbit.vcell.solvers.MembraneElement used on opensource projects

Example 1 with MembraneElement

use of cbit.vcell.solvers.MembraneElement in project vcell by virtualcell.

the class SmoldynFileWriter method writeMeshFile.

private void writeMeshFile() throws SolverException {
    FileOutputStream fos = null;
    try {
        polygonMembaneElementMap = new HashMap<Polygon, MembraneElement>();
        cartesianMesh = CartesianMesh.createSimpleCartesianMesh(resampledGeometry, polygonMembaneElementMap);
        // Write Mesh file
        File meshFile = new File(baseFileName + SimDataConstants.MESHFILE_EXTENSION);
        fos = new FileOutputStream(meshFile);
        cartesianMesh.write(new PrintStream(fos));
    } catch (Exception e) {
        e.printStackTrace(System.out);
        throw new SolverException(e.getMessage());
    } finally {
        try {
            if (fos != null) {
                fos.close();
            }
        } catch (IOException e) {
            e.printStackTrace();
        }
    }
}