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Example 6 with Json

use of com.b2international.snowowl.fhir.core.model.dt.Parameters.Json in project snow-owl by b2ihealthcare.

the class BundleTest method deserializeRequestBundle.

@Test
public void deserializeRequestBundle() throws Exception {
    String jsonCoding = "{ \"type\" : \"batch\", " + "\"resourceType\" : \"Bundle\", " + "\"entry\" : " + "[{\"request\" : " + "{\"method\" : \"POST\"," + "\"url\" : \"CodeSystem/$lookup\"}," + "\"resource\" : " + "{\"resourceType\" : \"Parameters\"," + "\"parameter\" : [" + "{\"valueUri\" : \"http://loinc.org\"," + "\"name\" : \"system\"}," + "{\"valueCode\" : \"23245-4\"," + "\"name\" : \"code\"}" + "]" + "}" + "}," + "{\"request\" : " + "{\"method\" : \"POST\"," + "\"url\" : \"CodeSystem/$lookup\"}," + "\"resource\" : " + "{\"resourceType\" : \"Parameters\"," + "\"parameter\" : [" + "{\"name\" : \"system\"," + "\"valueUri\" : \"http://snomed.info/sct\"}" + ",{\"valueCode\" : \"263495000\"," + "\"name\" : \"code\"}" + "]" + "}}" + "]}";
    Bundle bundle = objectMapper.readValue(jsonCoding, Bundle.class);
    assertEquals(BundleType.BATCH.getCode(), bundle.getType());
    Iterator<Entry> iterator = bundle.getItems().iterator();
    Entry bundleEntry = iterator.next();
    assertTrue(bundleEntry instanceof ParametersRequestEntry);
    ParametersRequestEntry requestEntry = (ParametersRequestEntry) bundleEntry;
    BatchRequest batchRequest = requestEntry.getRequest();
    assertEquals(HttpVerb.POST.getCode(), batchRequest.getMethod());
    assertEquals("CodeSystem/$lookup", batchRequest.getUrl().getUriValue());
    Fhir requestResource = requestEntry.getRequestResource();
    // Back to Domain JSON...
    Json json = new Parameters.Json(requestResource);
    LookupRequest returnedLookupRequest = objectMapper.convertValue(json, LookupRequest.class);
    assertEquals("23245-4", returnedLookupRequest.getCode());
    assertEquals("http://loinc.org", returnedLookupRequest.getSystem());
    bundleEntry = iterator.next();
    assertTrue(bundleEntry instanceof ParametersRequestEntry);
    requestEntry = (ParametersRequestEntry) bundleEntry;
    batchRequest = requestEntry.getRequest();
    assertEquals(HttpVerb.POST.getCode(), batchRequest.getMethod());
    assertEquals("CodeSystem/$lookup", batchRequest.getUrl().getUriValue());
    requestResource = requestEntry.getRequestResource();
    // Back to Domain JSON...
    json = new Parameters.Json(requestResource);
    returnedLookupRequest = objectMapper.convertValue(json, LookupRequest.class);
    assertEquals("263495000", returnedLookupRequest.getCode());
    assertEquals("http://snomed.info/sct", returnedLookupRequest.getSystem());
}
Also used : BatchRequest(com.b2international.snowowl.fhir.core.model.BatchRequest) ParametersRequestEntry(com.b2international.snowowl.fhir.core.model.ParametersRequestEntry) ParametersResponseEntry(com.b2international.snowowl.fhir.core.model.ParametersResponseEntry) ResourceRequestEntry(com.b2international.snowowl.fhir.core.model.ResourceRequestEntry) Entry(com.b2international.snowowl.fhir.core.model.Entry) ResourceResponseEntry(com.b2international.snowowl.fhir.core.model.ResourceResponseEntry) OperationOutcomeEntry(com.b2international.snowowl.fhir.core.model.OperationOutcomeEntry) Parameters(com.b2international.snowowl.fhir.core.model.dt.Parameters) Bundle(com.b2international.snowowl.fhir.core.model.Bundle) Json(com.b2international.snowowl.fhir.core.model.dt.Parameters.Json) Fhir(com.b2international.snowowl.fhir.core.model.dt.Parameters.Fhir) Json(com.b2international.snowowl.fhir.core.model.dt.Parameters.Json) ParametersRequestEntry(com.b2international.snowowl.fhir.core.model.ParametersRequestEntry) LookupRequest(com.b2international.snowowl.fhir.core.model.codesystem.LookupRequest) FhirTest(com.b2international.snowowl.fhir.tests.FhirTest) Test(org.junit.Test)

Example 7 with Json

use of com.b2international.snowowl.fhir.core.model.dt.Parameters.Json in project snow-owl by b2ihealthcare.

the class BundleTest method buildMixedBundle.

@Test
public void buildMixedBundle() throws Exception {
    LookupResult lookupResult = LookupResult.builder().name("test").display("display").addDesignation(Designation.builder().value("dValue").languageCode("uk").build()).addProperty(Property.builder().code("1234").description("propDescription").valueString("stringValue").build()).build();
    OperationOutcome operationOutcome = OperationOutcome.builder().addIssue(Issue.builder().code(IssueType.CODE_INVALID).diagnostics("Invalid code").severity(IssueSeverity.ERROR).build()).build();
    Json json1 = new Parameters.Json(lookupResult);
    ParametersResponseEntry lookupResultEntry = ParametersResponseEntry.builder().resource(new Parameters.Fhir(json1.parameters())).response(BatchResponse.createOkResponse()).build();
    OperationOutcomeEntry operationOutcomeEntry = OperationOutcomeEntry.builder().operationOutcome(operationOutcome).build();
    Bundle bundle = Bundle.builder().language("en").type(BundleType.BATCH_RESPONSE).addLink("self", "http://localhost:8080/snowowl/CodeSystem").addEntry(lookupResultEntry).addEntry(operationOutcomeEntry).build();
    assertEquals("en", bundle.getLanguage().getCodeValue());
    assertEquals(BundleType.BATCH_RESPONSE.getCode(), bundle.getType());
    Link link = bundle.getLink().iterator().next();
    assertEquals("self", link.getRelation());
    assertEquals("http://localhost:8080/snowowl/CodeSystem", link.getUrl().getUriValue());
    Iterator<Entry> iterator = bundle.getItems().iterator();
    Entry bundleEntry = iterator.next();
    assertTrue(bundleEntry instanceof ParametersResponseEntry);
    ParametersResponseEntry responseEntry = (ParametersResponseEntry) bundleEntry;
    assertEquals("200", responseEntry.getResponse().getStatus());
    Fhir requestResource = responseEntry.getResponseResource();
    // Back to Domain JSON...
    Json json = new Parameters.Json(requestResource);
    LookupResult returnedResponse = objectMapper.convertValue(json, LookupResult.class);
    assertEquals("test", returnedResponse.getName());
    assertEquals("display", returnedResponse.getDisplay());
    bundleEntry = iterator.next();
    assertTrue(bundleEntry instanceof OperationOutcomeEntry);
    OperationOutcomeEntry ooce = (OperationOutcomeEntry) bundleEntry;
    Collection<Issue> issues = ooce.getOperationOutcome().getIssues();
    assertEquals(1, issues.size());
    assertEquals(IssueSeverity.ERROR.getCode(), issues.iterator().next().getSeverity());
}
Also used : Parameters(com.b2international.snowowl.fhir.core.model.dt.Parameters) Issue(com.b2international.snowowl.fhir.core.model.Issue) Bundle(com.b2international.snowowl.fhir.core.model.Bundle) Fhir(com.b2international.snowowl.fhir.core.model.dt.Parameters.Fhir) Json(com.b2international.snowowl.fhir.core.model.dt.Parameters.Json) Fhir(com.b2international.snowowl.fhir.core.model.dt.Parameters.Fhir) OperationOutcomeEntry(com.b2international.snowowl.fhir.core.model.OperationOutcomeEntry) ParametersRequestEntry(com.b2international.snowowl.fhir.core.model.ParametersRequestEntry) ParametersResponseEntry(com.b2international.snowowl.fhir.core.model.ParametersResponseEntry) ResourceRequestEntry(com.b2international.snowowl.fhir.core.model.ResourceRequestEntry) Entry(com.b2international.snowowl.fhir.core.model.Entry) ResourceResponseEntry(com.b2international.snowowl.fhir.core.model.ResourceResponseEntry) OperationOutcomeEntry(com.b2international.snowowl.fhir.core.model.OperationOutcomeEntry) OperationOutcome(com.b2international.snowowl.fhir.core.model.OperationOutcome) ParametersResponseEntry(com.b2international.snowowl.fhir.core.model.ParametersResponseEntry) LookupResult(com.b2international.snowowl.fhir.core.model.codesystem.LookupResult) Link(com.b2international.snowowl.fhir.core.model.Link) FhirTest(com.b2international.snowowl.fhir.tests.FhirTest) Test(org.junit.Test)

Example 8 with Json

use of com.b2international.snowowl.fhir.core.model.dt.Parameters.Json in project snow-owl by b2ihealthcare.

the class SandBoxRestTest method buildCode.

// @Test
public void buildCode() throws IOException {
    Coding coding = Coding.builder().system("http://hl7.org/fhir/issue-severity").code("fatal").build();
    LookupRequest request = LookupRequest.builder().coding(coding).addProperty("name").build();
    Json json1 = new Parameters.Json(request);
    Fhir fhir = new Parameters.Fhir(json1.parameters());
    String fhirJson = objectMapper.writeValueAsString(fhir);
    System.out.println("This is the JSON request from the client: " + fhirJson);
    System.out.println("This is happening in the server-side...");
    Fhir parameters = objectMapper.readValue(fhirJson, Parameters.Fhir.class);
    System.out.println("Deserialized into FHIR parameters..." + parameters.getParameters());
    System.out.println("Back to Domain JSON...");
    Json json = new Parameters.Json(parameters);
    Parameters parameters2 = json.parameters();
    List<Parameter> parameters3 = parameters2.getParameters();
    for (Parameter parameter : parameters3) {
        System.out.println("P: " + parameter);
    }
    LookupRequest lookupRequest = objectMapper.convertValue(json, LookupRequest.class);
    System.out.println("... and back to the object representation we started from:" + lookupRequest);
    Json finalJson = new Parameters.Json(lookupRequest);
    Fhir finalFhir = new Parameters.Fhir(finalJson.parameters());
    String stringJson = objectMapper.writeValueAsString(finalFhir);
    System.out.println("Final final: " + stringJson);
/*
			*/
// String jsonBody = objectMapper.writeValueAsString(fhirParameters);
// System.out.println("Json: " + jsonBody);
}
Also used : Parameters(com.b2international.snowowl.fhir.core.model.dt.Parameters) Coding(com.b2international.snowowl.fhir.core.model.dt.Coding) Parameter(com.b2international.snowowl.fhir.core.model.dt.Parameter) Fhir(com.b2international.snowowl.fhir.core.model.dt.Parameters.Fhir) Json(com.b2international.snowowl.fhir.core.model.dt.Parameters.Json) LookupRequest(com.b2international.snowowl.fhir.core.model.codesystem.LookupRequest)

Example 9 with Json

use of com.b2international.snowowl.fhir.core.model.dt.Parameters.Json in project snow-owl by b2ihealthcare.

the class ValidateFhirCodeRestTest method convertToValidateCodeResult.

private ValidateCodeResult convertToValidateCodeResult(String responseString) throws Exception {
    Fhir parameters = objectMapper.readValue(responseString, Parameters.Fhir.class);
    Json json = new Parameters.Json(parameters);
    return objectMapper.convertValue(json, ValidateCodeResult.class);
}
Also used : Parameters(com.b2international.snowowl.fhir.core.model.dt.Parameters) Fhir(com.b2international.snowowl.fhir.core.model.dt.Parameters.Fhir) Json(com.b2international.snowowl.fhir.core.model.dt.Parameters.Json)

Example 10 with Json

use of com.b2international.snowowl.fhir.core.model.dt.Parameters.Json in project snow-owl by b2ihealthcare.

the class FhirBatchApiRestTest method singleLookupPost.

@Test
public void singleLookupPost() {
    LookupRequest request = LookupRequest.builder().coding(Coding.builder().system("http://snomed.info/sct").code(Concepts.IS_A).build()).build();
    Json json = new Parameters.Json(request);
    ParametersRequestEntry entry = ParametersRequestEntry.builder().request(BatchRequest.createPostRequest("CodeSystem/$lookup")).resource(new Parameters.Fhir(json.parameters())).build();
    Bundle bundle = Bundle.builder().language("en").total(1).type(BundleType.BATCH).addEntry(entry).build();
    givenAuthenticatedRequest(FHIR_ROOT_CONTEXT).contentType(APPLICATION_FHIR_JSON).body(bundle).when().post("/").prettyPeek().then().statusCode(200).body("resourceType", equalTo("Bundle")).body("type", is("batch-response")).root("entry[0]").body("response.status", equalTo("200")).root("entry[0].resource").body("resourceType", equalTo("Parameters"));
}
Also used : Json(com.b2international.snowowl.fhir.core.model.dt.Parameters.Json) LookupRequest(com.b2international.snowowl.fhir.core.model.codesystem.LookupRequest) Test(org.junit.Test) FhirRestTest(com.b2international.snowowl.fhir.tests.FhirRestTest)

Aggregations

Json (com.b2international.snowowl.fhir.core.model.dt.Parameters.Json)27 Fhir (com.b2international.snowowl.fhir.core.model.dt.Parameters.Fhir)21 Test (org.junit.Test)19 Parameters (com.b2international.snowowl.fhir.core.model.dt.Parameters)15 LookupRequest (com.b2international.snowowl.fhir.core.model.codesystem.LookupRequest)12 FhirTest (com.b2international.snowowl.fhir.tests.FhirTest)12 FhirRestTest (com.b2international.snowowl.fhir.tests.FhirRestTest)7 Bundle (com.b2international.snowowl.fhir.core.model.Bundle)6 ParametersRequestEntry (com.b2international.snowowl.fhir.core.model.ParametersRequestEntry)6 Entry (com.b2international.snowowl.fhir.core.model.Entry)5 OperationOutcomeEntry (com.b2international.snowowl.fhir.core.model.OperationOutcomeEntry)5 ParametersResponseEntry (com.b2international.snowowl.fhir.core.model.ParametersResponseEntry)5 ResourceRequestEntry (com.b2international.snowowl.fhir.core.model.ResourceRequestEntry)5 ResourceResponseEntry (com.b2international.snowowl.fhir.core.model.ResourceResponseEntry)5 LookupResult (com.b2international.snowowl.fhir.core.model.codesystem.LookupResult)4 Match (com.b2international.snowowl.fhir.core.model.conceptmap.Match)4 TranslateResult (com.b2international.snowowl.fhir.core.model.conceptmap.TranslateResult)4 Coding (com.b2international.snowowl.fhir.core.model.dt.Coding)4 Link (com.b2international.snowowl.fhir.core.model.Link)3 ValidateCodeRequest (com.b2international.snowowl.fhir.core.model.codesystem.ValidateCodeRequest)3