Examples with SnomedConceptSearchRequestBuilder com.b2international.snowowl.snomed.datastore.request.SnomedConceptSearchRequestBuilder used on opensource projects

Example 1 with SnomedConceptSearchRequestBuilder

use of com.b2international.snowowl.snomed.datastore.request.SnomedConceptSearchRequestBuilder in project snow-owl by b2ihealthcare.

the class SnomedRf2ExportRequest method getIdentifierConcepts.

private List<SnomedConcept> getIdentifierConcepts(final RepositoryContext context, final String currentVersion) {
    final Collection<String> refSetsToLoad;
    if (refSets == null) {
        // Retrieve all reference sets if refSets is null
        final Request<BranchContext, SnomedReferenceSets> refSetRequest = SnomedRequests.prepareSearchRefSet().all().build();
        final SnomedReferenceSets allReferenceSets = execute(context, currentVersion, refSetRequest);
        refSetsToLoad = allReferenceSets.stream().map(r -> r.getId()).collect(Collectors.toSet());
    } else {
        refSetsToLoad = refSets;
    }
    final SnomedConceptSearchRequestBuilder refSetRequestBuilder = SnomedRequests.prepareSearchConcept().all().filterByIds(refSetsToLoad).setExpand("pt(),referenceSet()").setLocales(locales());
    final Request<BranchContext, SnomedConcepts> request = refSetRequestBuilder.build();
    final SnomedConcepts referenceSets = execute(context, currentVersion, request);
    // Return only the identifier concepts which have an existing reference set on this branch
    return referenceSets.stream().filter(c -> c.getReferenceSet() != null).collect(Collectors.toList());
}

Example 2 with SnomedConceptSearchRequestBuilder

use of com.b2international.snowowl.snomed.datastore.request.SnomedConceptSearchRequestBuilder in project snow-owl by b2ihealthcare.

the class SnomedConceptSearchRequestEvaluator method evaluate.

@Override
public Concepts evaluate(ResourceURI uri, ServiceProvider context, Options search) {
    final String preferredDisplay = search.getString(OptionKey.DISPLAY);
    SnomedDisplayTermType displayTermType;
    if (preferredDisplay != null) {
        displayTermType = SnomedDisplayTermType.getEnum(preferredDisplay);
    } else {
        displayTermType = SnomedDisplayTermType.PT;
    }
    final SnomedConceptSearchRequestBuilder req = SnomedRequests.prepareSearchConcept();
    evaluateTermFilterOptions(req, search);
    if (search.containsKey(OptionKey.ID)) {
        req.filterByIds(search.getCollection(OptionKey.ID, String.class));
    }
    if (search.containsKey(OptionKey.ACTIVE)) {
        req.filterByActive(search.getBoolean(OptionKey.ACTIVE));
    }
    if (search.containsKey(OptionKey.PARENT)) {
        req.filterByParents(search.getCollection(OptionKey.PARENT, String.class));
    }
    if (search.containsKey(OptionKey.ANCESTOR)) {
        req.filterByAncestors(search.getCollection(OptionKey.ANCESTOR, String.class));
    }
    if (search.containsKey(OptionKey.TERM_TYPE)) {
        req.filterByDescriptionType(search.getString(OptionKey.TERM_TYPE));
    }
    if (search.containsKey(OptionKey.QUERY) || search.containsKey(OptionKey.MUST_NOT_QUERY)) {
        StringBuilder query = new StringBuilder();
        if (search.containsKey(OptionKey.QUERY)) {
            query.append("(").append(Ecl.or(search.getCollection(OptionKey.QUERY, String.class))).append(")");
        } else {
            query.append(Ecl.ANY);
        }
        if (search.containsKey(OptionKey.MUST_NOT_QUERY)) {
            query.append(" MINUS (").append(Ecl.or(search.getCollection(OptionKey.MUST_NOT_QUERY, String.class))).append(")");
        }
        req.filterByEcl(query.toString());
    }
    boolean requestedExpand = search.containsKey(OptionKey.EXPAND);
    // make sure preferredDescriptions() and displayTermType expansion data are always loaded
    Options expand = ExpandParser.parse("preferredDescriptions()").merge(requestedExpand ? search.getOptions(OptionKey.EXPAND) : Options.empty());
    if (!Strings.isNullOrEmpty(displayTermType.getExpand())) {
        expand = ExpandParser.parse(displayTermType.getExpand()).merge(expand);
    }
    SnomedConcepts matches = req.setLocales(search.getList(OptionKey.LOCALES, ExtendedLocale.class)).setSearchAfter(search.getString(OptionKey.AFTER)).setLimit(search.get(OptionKey.LIMIT, Integer.class)).setFields(search.getList(OptionKey.FIELDS, String.class)).setExpand(expand).sortBy(search.containsKey(SearchResourceRequest.OptionKey.SORT_BY) ? search.getList(SearchResourceRequest.OptionKey.SORT_BY, SearchResourceRequest.Sort.class) : null).build(uri).execute(context);
    return new Concepts(matches.stream().map(concept -> toConcept(uri, concept, displayTermType.getLabel(concept), requestedExpand)).collect(Collectors.toList()), matches.getSearchAfter(), matches.getLimit(), matches.getTotal());
}

Example 3 with SnomedConceptSearchRequestBuilder

use of com.b2international.snowowl.snomed.datastore.request.SnomedConceptSearchRequestBuilder in project snow-owl by b2ihealthcare.

the class SnomedSimpleTypeRefSetDSVExporter method writeValues.

private void writeValues(IProgressMonitor monitor, BufferedWriter writer) throws IOException {
    SearchResourceRequestIterator<SnomedConceptSearchRequestBuilder, SnomedConcepts> conceptIterator = getMemberConceptIterator(DATA_EXPAND);
    while (conceptIterator.hasNext()) {
        SnomedConcepts chunk = conceptIterator.next();
        writeValues(writer, chunk);
        monitor.worked(chunk.getItems().size());
    }
}