Examples with SnomedReferenceSets com.b2international.snowowl.snomed.core.domain.refset.SnomedReferenceSets used on opensource projects

Example 1 with SnomedReferenceSets

use of com.b2international.snowowl.snomed.core.domain.refset.SnomedReferenceSets in project snow-owl by b2ihealthcare.

the class SnomedRf2ExportRequest method getIdentifierConcepts.

private List<SnomedConcept> getIdentifierConcepts(final RepositoryContext context, final String currentVersion) {
    final Collection<String> refSetsToLoad;
    if (refSets == null) {
        // Retrieve all reference sets if refSets is null
        final Request<BranchContext, SnomedReferenceSets> refSetRequest = SnomedRequests.prepareSearchRefSet().all().build();
        final SnomedReferenceSets allReferenceSets = execute(context, currentVersion, refSetRequest);
        refSetsToLoad = allReferenceSets.stream().map(r -> r.getId()).collect(Collectors.toSet());
    } else {
        refSetsToLoad = refSets;
    }
    final SnomedConceptSearchRequestBuilder refSetRequestBuilder = SnomedRequests.prepareSearchConcept().all().filterByIds(refSetsToLoad).setExpand("pt(),referenceSet()").setLocales(locales());
    final Request<BranchContext, SnomedConcepts> request = refSetRequestBuilder.build();
    final SnomedConcepts referenceSets = execute(context, currentVersion, request);
    // Return only the identifier concepts which have an existing reference set on this branch
    return referenceSets.stream().filter(c -> c.getReferenceSet() != null).collect(Collectors.toList());
}

Example 2 with SnomedReferenceSets

use of com.b2international.snowowl.snomed.core.domain.refset.SnomedReferenceSets in project snow-owl by b2ihealthcare.

the class SnomedRf2ImportRequest method updateCodeSystemSettings.

private void updateCodeSystemSettings(final BranchContext context, final ResourceURI codeSystemUri) throws Exception {
    SnomedReferenceSets languageReferenceSets = SnomedRequests.prepareSearchRefSet().all().filterByType(SnomedRefSetType.LANGUAGE).filterByActive(true).setFields(SnomedConceptDocument.Fields.ID).sortBy(Sort.fieldAsc(SnomedConceptDocument.Fields.ID)).build().execute(context);
    /*
		 * XXX: The default language in locales is always "en", as there is no
		 * machine-readable information about what language code each language type
		 * reference set is associated with.
		 */
    final List<ExtendedLocale> locales = languageReferenceSets.stream().map(refSet -> new ExtendedLocale("en", "", refSet.getId())).collect(Collectors.toList());
    // fetch codesystem again to get the latest settings
    CodeSystem currentSnomedCodeSystem = CodeSystemRequests.prepareGetCodeSystem(codeSystemUri.getResourceId()).buildAsync().get(context);
    Map<String, SnomedLanguageConfig> mergedLanguagesConfiguration = Maps.newLinkedHashMap();
    SnomedDescriptionUtils.getLanguagesConfiguration(context.service(ObjectMapper.class), currentSnomedCodeSystem).forEach(config -> {
        mergedLanguagesConfiguration.put(config.getLanguageTag(), config);
    });
    languageReferenceSets.stream().map(SnomedReferenceSet::getId).filter(SnomedTerminologyComponentConstants.LANG_REFSET_DIALECT_ALIASES::containsKey).forEach(langRefsetId -> {
        final String dialect = SnomedTerminologyComponentConstants.LANG_REFSET_DIALECT_ALIASES.get(langRefsetId);
        // ignore any aliases that are already defined by using computeIfAbsent
        mergedLanguagesConfiguration.computeIfAbsent(dialect, languageTag -> new SnomedLanguageConfig(languageTag, langRefsetId));
    });
    CodeSystemRequests.prepareUpdateCodeSystem(codeSystemUri.getResourceId()).setSettings(Map.of(CodeSystem.CommonSettings.LOCALES, locales, SnomedTerminologyComponentConstants.CODESYSTEM_LANGUAGE_CONFIG_KEY, mergedLanguagesConfiguration.values())).build(context.service(User.class).getUsername(), String.format("Update '%s' settings based on RF2 import", codeSystemUri.getResourceId())).execute(context.service(IEventBus.class)).getSync(2, TimeUnit.MINUTES);
}