Examples with Note com.eaglegenomics.simlims.core.Note used on opensource projects

Example 6 with Note

use of com.eaglegenomics.simlims.core.Note in project miso-lims by miso-lims.

the class HibernatePoolDaoIT method getATestPool.

private PoolImpl getATestPool(int counter, Date creationDate, boolean discarded, int notes) {
    final PoolImpl rtn = new PoolImpl();
    final User mockUser = new UserImpl();
    mockUser.setId(1L);
    mockUser.setLoginName("franklin");
    rtn.setConcentration(new BigDecimal(counter));
    rtn.setName("Test Pool " + counter);
    rtn.setIdentificationBarcode("BOOP" + counter);
    rtn.setCreationTime(creationDate);
    rtn.setLastModified(creationDate);
    rtn.setPlatformType(PlatformType.ILLUMINA);
    rtn.setAlias("Alias " + counter);
    rtn.setLastModifier(mockUser);
    rtn.setCreator(mockUser);
    rtn.setDiscarded(discarded);
    rtn.setVolume(discarded ? BigDecimal.ZERO : new BigDecimal(counter));
    rtn.setQcPassed(false);
    rtn.setDescription("Description " + counter);
    for (int i = 0; i < notes; i++) {
        Note note = new Note();
        note.setCreationDate(new Date());
        note.setOwner(mockUser);
        note.setText(note.getCreationDate().toString() + " stuff");
        rtn.addNote(note);
    }
    return rtn;
}

Example 7 with Note

use of com.eaglegenomics.simlims.core.Note in project miso-lims by miso-lims.

the class DefaultRequisitionService method deleteNote.

@Override
public void deleteNote(Requisition entity, Long noteId) throws IOException {
    if (noteId == null) {
        throw new IllegalArgumentException("Cannot delete an unsaved note");
    }
    Requisition managed = requisitionDao.get(entity.getId());
    Note deleteNote = managed.getNotes().stream().filter(n -> n.getId() == noteId.longValue()).findFirst().orElse(null);
    if (deleteNote == null) {
        throw new IOException(String.format("Note %d not found for requisition %d", noteId, entity.getId()));
    }
    authorizationManager.throwIfNonAdminOrMatchingOwner(deleteNote.getOwner());
    managed.getNotes().remove(deleteNote);
    requisitionDao.update(managed);
}

Example 8 with Note

use of com.eaglegenomics.simlims.core.Note in project miso-lims by miso-lims.

the class DefaultSampleServiceTest method testAddNote.

@Test
public void testAddNote() throws Exception {
    Sample paramSample = new SampleImpl();
    paramSample.setId(1L);
    paramSample.setAlias("paramSample");
    Note note = new Note();
    Sample dbSample = new SampleImpl();
    dbSample.setId(paramSample.getId());
    dbSample.setAlias("persistedSample");
    Mockito.when(sampleStore.get(paramSample.getId())).thenReturn(dbSample);
    sut.addNote(paramSample, note);
    ArgumentCaptor<Sample> capture = ArgumentCaptor.forClass(Sample.class);
    Mockito.verify(sampleStore).update(capture.capture());
    Sample savedSample = capture.getValue();
    assertEquals(1, savedSample.getNotes().size());
}

Example 9 with Note

use of com.eaglegenomics.simlims.core.Note in project miso-lims by miso-lims.

the class NoteRestController method addNote.

private <T extends Identifiable> void addNote(NoteService<T> service, long entityId, NoteRequest request) throws IOException {
    T entity = service.get(entityId);
    Note note = new Note();
    note.setInternalOnly(request.isInternalOnly());
    note.setText(request.getText());
    note.setCreationDate(new Date());
    service.addNote(entity, note);
}