Examples with Note com.eaglegenomics.simlims.core.Note used on opensource projects

Example 1 with Note

use of com.eaglegenomics.simlims.core.Note in project miso-lims by miso-lims.

the class DefaultPoolService method deleteNote.

@Override
public void deleteNote(Pool pool, Long noteId) throws IOException {
    if (noteId == null) {
        throw new IllegalArgumentException("Cannot delete an unsaved Note");
    }
    Pool managed = poolStore.get(pool.getId());
    Note deleteNote = null;
    for (Note note : managed.getNotes()) {
        if (note.getId() == noteId.longValue()) {
            deleteNote = note;
            break;
        }
    }
    if (deleteNote == null) {
        throw new IOException("Note " + noteId + " not found for Pool " + pool.getId());
    }
    authorizationManager.throwIfNonAdminOrMatchingOwner(deleteNote.getOwner());
    managed.getNotes().remove(deleteNote);
    poolStore.save(managed);
}

Example 2 with Note

use of com.eaglegenomics.simlims.core.Note in project miso-lims by miso-lims.

the class DefaultRunService method deleteNote.

@Override
public void deleteNote(Run run, Long noteId) throws IOException {
    if (noteId == null) {
        throw new IllegalArgumentException("Cannot delete an unsaved Note");
    }
    Run managed = runDao.get(run.getId());
    Note deleteNote = null;
    for (Note note : managed.getNotes()) {
        if (note.getId() == noteId.longValue()) {
            deleteNote = note;
            break;
        }
    }
    if (deleteNote == null) {
        throw new IOException("Note " + noteId + " not found for Run  " + run.getId());
    }
    authorizationManager.throwIfNonAdminOrMatchingOwner(deleteNote.getOwner());
    managed.getNotes().remove(deleteNote);
    runDao.save(managed);
}

Example 3 with Note

use of com.eaglegenomics.simlims.core.Note in project miso-lims by miso-lims.

the class DefaultSampleService method deleteNote.

@Override
public void deleteNote(Sample sample, Long noteId) throws IOException {
    if (noteId == null) {
        throw new IllegalArgumentException("Cannot delete an unsaved Note");
    }
    Sample managed = sampleStore.get(sample.getId());
    Note deleteNote = null;
    for (Note note : managed.getNotes()) {
        if (note.getId() == noteId.longValue()) {
            deleteNote = note;
            break;
        }
    }
    if (deleteNote == null) {
        throw new IOException("Note " + noteId + " not found for Sample " + sample.getId());
    }
    authorizationManager.throwIfNonAdminOrMatchingOwner(deleteNote.getOwner());
    managed.getNotes().remove(deleteNote);
    sampleStore.update(managed);
}

Example 4 with Note

use of com.eaglegenomics.simlims.core.Note in project miso-lims by miso-lims.

the class DefaultLibraryService method deleteNote.

@Override
public void deleteNote(Library library, Long noteId) throws IOException {
    if (noteId == null) {
        throw new IllegalArgumentException("Cannot delete an unsaved Note");
    }
    Library managed = libraryDao.get(library.getId());
    Note deleteNote = null;
    for (Note note : managed.getNotes()) {
        if (note.getId() == noteId.longValue()) {
            deleteNote = note;
            break;
        }
    }
    if (deleteNote == null) {
        throw new IOException("Note " + noteId + " not found for Library  " + library.getId());
    }
    authorizationManager.throwIfNonAdminOrMatchingOwner(deleteNote.getOwner());
    managed.getNotes().remove(deleteNote);
    libraryDao.save(managed);
}

Example 5 with Note

use of com.eaglegenomics.simlims.core.Note in project miso-lims by miso-lims.

the class DefaultSampleServiceTest method testDeleteNote.

@Test
public void testDeleteNote() throws Exception {
    Sample paramSample = new SampleImpl();
    paramSample.setId(1L);
    paramSample.setAlias("paramSample");
    Sample dbSample = new SampleImpl();
    dbSample.setId(paramSample.getId());
    dbSample.setAlias("persistedSample");
    Note note = new Note();
    note.setId(3L);
    User owner = new UserImpl();
    owner.setId(5L);
    note.setOwner(owner);
    dbSample.addNote(note);
    Mockito.when(sampleStore.get(paramSample.getId())).thenReturn(dbSample);
    sut.deleteNote(paramSample, note.getId());
    Mockito.verify(authorizationManager).throwIfNonAdminOrMatchingOwner(owner);
    ArgumentCaptor<Sample> capture = ArgumentCaptor.forClass(Sample.class);
    Mockito.verify(sampleStore).update(capture.capture());
    Sample savedSample = capture.getValue();
    assertTrue(savedSample.getNotes().isEmpty());
}