Examples with Parameter com.ibm.cohort.cql.evaluation.parameters.Parameter used on opensource projects

Example 51 with Parameter

use of com.ibm.cohort.cql.evaluation.parameters.Parameter in project quality-measure-and-cohort-service by Alvearie.

the class DefaultMeasurementPeriodStrategyTest method parameter_not_null_datetime_with_ampersand___value_used.

@Test
public void parameter_not_null_datetime_with_ampersand___value_used() {
    Measure measure = new Measure();
    Map<String, Parameter> parameterOverrides = Collections.singletonMap(DefaultMeasurementPeriodStrategy.DEFAULT_MEASUREMENT_PERIOD_PARAMETER, new IntervalParameter(new DatetimeParameter("@2020-01-01T00:00:00.0"), true, new DatetimeParameter("@2021-01-01T00:00:00.0"), true));
    Pair<String, String> result = new DefaultMeasurementPeriodStrategy().getMeasurementPeriod(measure, parameterOverrides);
    assertEquals("Unexpected start", "2020-01-01", result.getLeft());
    assertEquals("Unexpected end", "2021-01-01", result.getRight());
}

Example 52 with Parameter

use of com.ibm.cohort.cql.evaluation.parameters.Parameter in project quality-measure-and-cohort-service by Alvearie.

the class SparkCqlEvaluatorTest method testGetFilteredRequestsGlobalParametersApplied.

@Test
public void testGetFilteredRequestsGlobalParametersApplied() {
    CqlEvaluationRequests requests = new CqlEvaluationRequests();
    requests.setGlobalParameters(new HashMap<String, Parameter>() {

        {
            put("param1", new IntegerParameter(10));
            put("param2", new StringParameter("10"));
            put("globalParam", new DecimalParameter("10.0"));
        }
    });
    CqlEvaluationRequest request = makeEvaluationRequest("context", "lib1", "1.0.0");
    request.setExpressionsByNames(new HashSet<>(Collections.singletonList("cohortOrig")));
    request.setParameters(new HashMap<String, Parameter>() {

        {
            put("param1", new IntegerParameter(1));
            put("param2", new StringParameter("1"));
            put("param3", new DecimalParameter("1.0"));
        }
    });
    CqlEvaluationRequest request2 = makeEvaluationRequest("context", "lib2", "1.0.0");
    request2.setExpressionsByNames(new HashSet<>(Collections.singletonList("cohortOrig")));
    List<CqlEvaluationRequest> evaluations = Arrays.asList(request, request2);
    requests.setEvaluations(evaluations);
    CqlEvaluationRequests actual = evaluator.getFilteredRequests(requests, null, null);
    for (CqlEvaluationRequest evaluation : actual.getEvaluations()) {
        if (evaluation.getDescriptor().getLibraryId().equals("lib1")) {
            assertEquals(4, evaluation.getParameters().size());
            assertEquals(new IntegerParameter(1), evaluation.getParameters().get("param1"));
            assertEquals(new StringParameter("1"), evaluation.getParameters().get("param2"));
            assertEquals(new DecimalParameter("1.0"), evaluation.getParameters().get("param3"));
            assertEquals(new DecimalParameter("10.0"), evaluation.getParameters().get("globalParam"));
        } else if (evaluation.getDescriptor().getLibraryId().equals("lib2")) {
            assertEquals(3, evaluation.getParameters().size());
            assertEquals(new IntegerParameter(10), evaluation.getParameters().get("param1"));
            assertEquals(new StringParameter("10"), evaluation.getParameters().get("param2"));
            assertEquals(new DecimalParameter("10.0"), evaluation.getParameters().get("globalParam"));
        } else {
            fail("Unexpected library encountered. Expected only lib1 and lib2.");
        }
    }
}

Example 53 with Parameter

use of com.ibm.cohort.cql.evaluation.parameters.Parameter in project quality-measure-and-cohort-service by Alvearie.

the class SparkCqlEvaluatorTest method testParameterMatrixOutputWithKeyParametersSpecifiedSuccess.

@Test
public void testParameterMatrixOutputWithKeyParametersSpecifiedSuccess() throws Exception {
    String outputLocation = "target/output/param-matrix-key-params/patient_cohort";
    CqlEvaluationRequest template = new CqlEvaluationRequest();
    template.setDescriptor(new CqlLibraryDescriptor().setLibraryId("SampleLibrary").setVersion("1.0.0"));
    template.setExpressionsByNames(Collections.singleton("IsFemale"));
    template.setContextKey("Patient");
    template.setContextValue("NA");
    CqlEvaluationRequests requests = new CqlEvaluationRequests();
    requests.setEvaluations(new ArrayList<>());
    List<Integer> ages = Arrays.asList(15, 17, 18);
    for (Integer age : ages) {
        Map<String, Parameter> parameters = new HashMap<>();
        parameters.put("MinimumAge", new IntegerParameter(age));
        CqlEvaluationRequest request = new CqlEvaluationRequest(template);
        request.setParameters(parameters);
        requests.getEvaluations().add(request);
        CqlExpressionConfiguration renamed = new CqlExpressionConfiguration();
        renamed.setName("IsFemale");
        renamed.setOutputColumn("Renamed");
        Map<String, Parameter> parametersWithExtraneous = new HashMap<>(parameters);
        parametersWithExtraneous.put("Extraneous", new IntegerParameter(0));
        request = new CqlEvaluationRequest(template);
        request.setExpressions(Collections.singleton(renamed));
        request.setParameters(parametersWithExtraneous);
        requests.getEvaluations().add(request);
    }
    ObjectMapper om = new ObjectMapper();
    File jobsFile = new File("target/param-matrix/cql-jobs.json");
    if (!jobsFile.exists()) {
        jobsFile.getParentFile().mkdirs();
    }
    FileUtils.write(jobsFile, om.writeValueAsString(requests), StandardCharsets.UTF_8);
    try {
        String[] args = new String[] { "-d", "src/test/resources/simple-job/context-definitions.json", "-j", jobsFile.getPath(), "-m", "src/test/resources/simple-job/modelinfo/simple-modelinfo-1.0.0.xml", "-c", "src/test/resources/simple-job/cql", "-i", "Patient=" + new File("src/test/resources/simple-job/testdata/patient").toURI().toString(), "-o", "Patient=" + new File(outputLocation).toURI().toString(), "--output-format", "delta", "--overwrite-output-for-contexts", "--metadata-output-path", outputLocation, "--key-parameters", "MinimumAge" };
        SparkCqlEvaluator.main(args);
        validateOutputCountsAndColumns(outputLocation, new HashSet<>(Arrays.asList("id", "parameters", "SampleLibrary|IsFemale", "Renamed")), 10 * ages.size(), "delta");
    } finally {
        jobsFile.delete();
    }
}

Example 54 with Parameter

use of com.ibm.cohort.cql.evaluation.parameters.Parameter in project quality-measure-and-cohort-service by Alvearie.

the class SparkCqlEvaluatorTest method testParameterMatrixOutputNonOverlappingParamsSuccess.

@Test
public void testParameterMatrixOutputNonOverlappingParamsSuccess() throws Exception {
    String outputLocation = "target/output/param-matrix-non-overlap/patient_cohort";
    CqlEvaluationRequest template = new CqlEvaluationRequest();
    template.setDescriptor(new CqlLibraryDescriptor().setLibraryId("SampleLibrary").setVersion("1.0.0"));
    template.setExpressionsByNames(Collections.singleton("IsFemale"));
    template.setContextKey("Patient");
    template.setContextValue("NA");
    CqlEvaluationRequests requests = new CqlEvaluationRequests();
    requests.setEvaluations(new ArrayList<>());
    List<Integer> ages = Arrays.asList(15, 17, 18);
    for (Integer age : ages) {
        Map<String, Parameter> parameters = new HashMap<>();
        parameters.put("MinimumAge", new IntegerParameter(age));
        CqlEvaluationRequest request = new CqlEvaluationRequest(template);
        request.setParameters(parameters);
        requests.getEvaluations().add(request);
        CqlExpressionConfiguration renamed = new CqlExpressionConfiguration();
        renamed.setName("IsFemale");
        renamed.setOutputColumn("Renamed");
        Map<String, Parameter> parametersWithExtraneous = new HashMap<>(parameters);
        parametersWithExtraneous.put("Extraneous", new IntegerParameter(0));
        request = new CqlEvaluationRequest(template);
        request.setExpressions(Collections.singleton(renamed));
        request.setParameters(parametersWithExtraneous);
        requests.getEvaluations().add(request);
    }
    ObjectMapper om = new ObjectMapper();
    File jobsFile = new File("target/output/param-matrix/cql-jobs.json");
    if (!jobsFile.exists()) {
        jobsFile.getParentFile().mkdirs();
    }
    FileUtils.write(jobsFile, om.writeValueAsString(requests), StandardCharsets.UTF_8);
    try {
        String[] args = new String[] { "-d", "src/test/resources/simple-job/context-definitions.json", "-j", jobsFile.getPath(), "-m", "src/test/resources/simple-job/modelinfo/simple-modelinfo-1.0.0.xml", "-c", "src/test/resources/simple-job/cql", "-i", "Patient=" + new File("src/test/resources/simple-job/testdata/patient").toURI().toString(), "-o", "Patient=" + new File(outputLocation).toURI().toString(), "--output-format", "delta", "--overwrite-output-for-contexts", "--metadata-output-path", outputLocation };
        SparkCqlEvaluator.main(args);
        // Because we've got a mismatch in the parameters in the first and second columns, each context
        // has a set of rows for the first parameter set where one column is populated and the other is null
        // and another set of rows where the first column is null and the second is populated.
        validateOutputCountsAndColumns(outputLocation, new HashSet<>(Arrays.asList("id", "parameters", "SampleLibrary|IsFemale", "Renamed")), 10 * ages.size() * /*outputColumns=*/
        2, "delta");
    } finally {
        jobsFile.delete();
    }
}

Example 55 with Parameter

use of com.ibm.cohort.cql.evaluation.parameters.Parameter in project quality-measure-and-cohort-service by Alvearie.

the class CqlContextFactory method createContext.

/**
 * Initialize a CQL context from the values associated with the provided
 * CQL Context Key. This encapsulates the set of initializations that are
 * static from run to run.
 *
 * @param contextKey container for stable context settings
 * @return initialized CQL Context object
 * @throws CqlLibraryDeserializationException if the specified library cannot be loaded
 */
protected Context createContext(ContextCacheKey contextKey) throws CqlLibraryDeserializationException {
    LibraryLoader libraryLoader = new ProviderBasedLibraryLoader(contextKey.libraryProvider);
    VersionedIdentifier vid = new VersionedIdentifier().withId(contextKey.topLevelLibraryIdentifier.getId()).withVersion(contextKey.topLevelLibraryIdentifier.getVersion());
    Library entryPoint = libraryLoader.load(vid);
    Context cqlContext;
    if (contextKey.evaluationDateTime != null) {
        cqlContext = new Context(entryPoint, contextKey.evaluationDateTime, new CqlSystemDataProvider());
    } else {
        cqlContext = new Context(entryPoint, new CqlSystemDataProvider());
    }
    cqlContext.registerExternalFunctionProvider(vid, this.externalFunctionProvider);
    registerExternalIncludes(cqlContext, cqlContext.getCurrentLibrary());
    cqlContext.registerLibraryLoader(libraryLoader);
    cqlContext.registerTerminologyProvider(contextKey.terminologyProvider);
    if (contextKey.parameters != null) {
        Library library = cqlContext.getCurrentLibrary();
        for (Map.Entry<String, Parameter> entry : contextKey.parameters.entrySet()) {
            Object cqlValue = entry.getValue().toCqlType();
            cqlContext.setParameter(library.getLocalId(), entry.getKey(), cqlValue);
        }
        if (library.getIncludes() != null && library.getIncludes().getDef() != null) {
            for (IncludeDef def : library.getIncludes().getDef()) {
                String name = def.getLocalIdentifier();
                for (Map.Entry<String, Parameter> parameterValue : contextKey.parameters.entrySet()) {
                    Object cqlValue = parameterValue.getValue().toCqlType();
                    cqlContext.setParameter(name, parameterValue.getKey(), cqlValue);
                }
            }
        }
    }
    return cqlContext;
}