Examples with ArachneFileMeta com.odysseusinc.arachne.storage.model.ArachneFileMeta used on opensource projects

Example 6 with ArachneFileMeta

use of com.odysseusinc.arachne.storage.model.ArachneFileMeta in project ArachneCentralAPI by OHDSI.

the class BaseSubmissionServiceImpl method createResultFilesBatch.

@Override
@Transactional
public List<ResultFile> createResultFilesBatch(List<FileSaveRequest> fileSaveRequests, Submission submission, Long createById) throws IOException {
    fileSaveRequests.forEach(entry -> entry.setDestinationFilepath(contentStorageHelper.getResultFilesDir(submission, entry.getDestinationFilepath())));
    List<ArachneFileMeta> metaList = contentStorageService.saveBatch(fileSaveRequests, createById);
    return metaList.stream().map(fm -> {
        ResultFile resultFile = new ResultFile();
        resultFile.setSubmission(submission);
        resultFile.setPath(fm.getPath());
        return resultFile;
    }).collect(Collectors.toList());
}

Example 7 with ArachneFileMeta

use of com.odysseusinc.arachne.storage.model.ArachneFileMeta in project ArachneCentralAPI by OHDSI.

the class BaseSubmissionServiceImpl method getResultFileAndCheckPermission.

@Override
public ArachneFileMeta getResultFileAndCheckPermission(IUser user, Submission submission, Long analysisId, String fileUuid) throws PermissionDeniedException {
    ArachneFileMeta byFileUuid = contentStorageService.getFileByIdentifier(fileUuid);
    checkSubmissionPermission(user, submission);
    return byFileUuid;
}

Example 8 with ArachneFileMeta

use of com.odysseusinc.arachne.storage.model.ArachneFileMeta in project ArachneCentralAPI by OHDSI.

the class BaseSubmissionServiceImpl method deleteSubmissionResultFile.

@Override
public boolean deleteSubmissionResultFile(Long submissionId, ResultFile resultFile) throws NotExistException, ValidationException {
    final T submission = submissionRepository.findByIdAndStatusIn(submissionId, Collections.singletonList(IN_PROGRESS.name()));
    throwNotExistExceptionIfNull(submission, submissionId);
    Optional.ofNullable(resultFile).orElseThrow(() -> new NotExistException(String.format(RESULT_FILE_NOT_EXISTS_EXCEPTION, resultFile.getId(), submission.getId()), ResultFile.class));
    ArachneFileMeta fileMeta = contentStorageService.getFileByPath(resultFile.getPath());
    if (fileMeta.getCreatedBy() == null) {
        // not manually uploaded
        throw new ValidationException(String.format(FILE_NOT_UPLOADED_MANUALLY_EXCEPTION, resultFile.getId()));
    }
    deleteSubmissionResultFile(resultFile);
    submission.getResultFiles().remove(resultFile);
    submission.setUpdated(new Date());
    saveSubmission(submission);
    return true;
}

Example 9 with ArachneFileMeta

use of com.odysseusinc.arachne.storage.model.ArachneFileMeta in project ArachneCentralAPI by OHDSI.

the class BaseSubmissionServiceImpl method createResultFile.

@Override
@Transactional
public ResultFile createResultFile(Path filePath, String name, Submission submission, Long createById) throws IOException {
    ResultFile resultFile = new ResultFile();
    resultFile.setSubmission(submission);
    ArachneFileMeta fileMeta = contentStorageService.saveFile(filePath.toFile(), contentStorageHelper.getResultFilesDir(submission, name), createById);
    resultFile.setPath(fileMeta.getPath());
    return resultFile;
}

Example 10 with ArachneFileMeta

use of com.odysseusinc.arachne.storage.model.ArachneFileMeta in project ArachneCentralAPI by OHDSI.

the class BaseSubmissionController method getResultFiles.

@ApiOperation("Get result files of the submission.")
@RequestMapping(value = "/api/v1/analysis-management/submissions/{submissionId}/results", method = GET)
public List<ResultFileDTO> getResultFiles(Principal principal, @PathVariable("submissionId") Long submissionId, @RequestParam(value = "path", required = false, defaultValue = "") String path, @RequestParam(value = "real-name", required = false) String realName) throws PermissionDeniedException, IOException {
    IUser user = userService.getByEmail(principal.getName());
    ResultFileSearch resultFileSearch = new ResultFileSearch();
    resultFileSearch.setPath(path);
    resultFileSearch.setRealName(realName);
    List<? extends ArachneFileMeta> resultFileList = submissionService.getResultFiles(user, submissionId, resultFileSearch);
    String resultFilesPath = contentStorageHelper.getResultFilesDir(Submission.class, submissionId, null);
    return resultFileList.stream().map(rf -> {
        ResultFileDTO rfDto = conversionService.convert(rf, ResultFileDTO.class);
        rfDto.setSubmissionId(submissionId);
        rfDto.setRelativePath(contentStorageHelper.getRelativePath(resultFilesPath, rfDto.getPath()));
        return rfDto;
    }).collect(Collectors.toList());
}