Examples with Disease de.symeda.sormas.api.Disease used on opensource projects

Example 1 with Disease

use of de.symeda.sormas.api.Disease in project SORMAS-Project by hzi-braunschweig.

the class CaseEditFragment method updateCaseConfirmationVisibility.

private void updateCaseConfirmationVisibility(FragmentCaseEditLayoutBinding contentBinding) {
    Disease disease = record.getDisease();
    boolean extendedClassification = DiseaseConfigurationCache.getInstance().usesExtendedClassification(disease);
    if (extendedClassification) {
        boolean extendedClassificationMulti = DiseaseConfigurationCache.getInstance().usesExtendedClassificationMulti(disease);
        if (extendedClassificationMulti) {
            contentBinding.caseDataClinicalConfirmation.setVisibility(VISIBLE);
            contentBinding.caseDataEpidemiologicalConfirmation.setVisibility(VISIBLE);
            contentBinding.caseDataLaboratoryDiagnosticConfirmation.setVisibility(VISIBLE);
            contentBinding.caseDataCaseConfirmationBasis.setVisibility(GONE);
        } else {
            contentBinding.caseDataClinicalConfirmation.setVisibility(GONE);
            contentBinding.caseDataEpidemiologicalConfirmation.setVisibility(GONE);
            contentBinding.caseDataLaboratoryDiagnosticConfirmation.setVisibility(GONE);
            contentBinding.caseDataCaseConfirmationBasis.setVisibility(record.getCaseClassification() == CaseClassification.CONFIRMED ? VISIBLE : GONE);
        }
    } else {
        contentBinding.caseDataClinicalConfirmation.setVisibility(GONE);
        contentBinding.caseDataEpidemiologicalConfirmation.setVisibility(GONE);
        contentBinding.caseDataLaboratoryDiagnosticConfirmation.setVisibility(GONE);
        contentBinding.caseDataCaseConfirmationBasis.setVisibility(GONE);
    }
}

Example 2 with Disease

use of de.symeda.sormas.api.Disease in project SORMAS-Project by hzi-braunschweig.

the class CaseNewFragment method onAfterLayoutBinding.

@Override
public void onAfterLayoutBinding(final FragmentCaseNewLayoutBinding contentBinding) {
    InfrastructureDaoHelper.initializeHealthFacilityDetailsFieldVisibility(contentBinding.caseDataHealthFacility, contentBinding.caseDataHealthFacilityDetails);
    InfrastructureDaoHelper.initializePointOfEntryDetailsFieldVisibility(contentBinding.caseDataPointOfEntry, contentBinding.caseDataPointOfEntryDetails);
    if (!ConfigProvider.isConfiguredServer(CountryHelper.COUNTRY_CODE_GERMANY) && !ConfigProvider.isConfiguredServer(CountryHelper.COUNTRY_CODE_SWITZERLAND)) {
        contentBinding.caseDataExternalID.setVisibility(GONE);
        contentBinding.caseDataExternalToken.setVisibility(GONE);
    } else {
        contentBinding.caseDataEpidNumber.setVisibility(GONE);
    }
    contentBinding.caseDataResponsibleRegion.setEnabled(false);
    contentBinding.caseDataResponsibleRegion.setRequired(false);
    contentBinding.caseDataResponsibleDistrict.setEnabled(false);
    contentBinding.caseDataResponsibleDistrict.setRequired(false);
    User user = ConfigProvider.getUser();
    if (user.getPointOfEntry() == null) {
        contentBinding.facilityOrHome.setValue(TypeOfPlace.FACILITY);
    }
    if (user.hasUserRole(UserRole.HOSPITAL_INFORMANT) && user.getHealthFacility() != null) {
        // Hospital Informants are not allowed to create cases in another health facility
        contentBinding.caseDataCommunity.setEnabled(false);
        contentBinding.caseDataCommunity.setRequired(false);
        contentBinding.caseDataHealthFacility.setEnabled(false);
        contentBinding.caseDataHealthFacility.setRequired(false);
        contentBinding.facilityOrHome.setEnabled(false);
        contentBinding.facilityTypeGroup.setEnabled(false);
        contentBinding.caseDataFacilityType.setEnabled(false);
        contentBinding.caseDataDifferentPlaceOfStayJurisdiction.setEnabled(false);
        contentBinding.caseDataDifferentPlaceOfStayJurisdiction.setVisibility(GONE);
    }
    if (user.hasUserRole(UserRole.POE_INFORMANT) && user.getPointOfEntry() != null) {
        contentBinding.caseDataPointOfEntry.setEnabled(false);
        contentBinding.caseDataPointOfEntry.setRequired(false);
    }
    if (user.hasUserRole(UserRole.COMMUNITY_INFORMANT) && user.getCommunity() != null) {
        // Community Informants are not allowed to create cases in another community
        contentBinding.caseDataCommunity.setEnabled(false);
        contentBinding.caseDataCommunity.setRequired(false);
    }
    // Disable personal details and disease fields when case is created from contact
    // or event person
    Bundler bundler = new Bundler(getArguments());
    if (bundler.getContactUuid() != null || bundler.getEventParticipantUuid() != null) {
        contentBinding.caseDataFirstName.setEnabled(false);
        contentBinding.caseDataLastName.setEnabled(false);
        contentBinding.personSex.setEnabled(false);
        contentBinding.personBirthdateYYYY.setEnabled(false);
        contentBinding.personBirthdateMM.setEnabled(false);
        contentBinding.personBirthdateDD.setEnabled(false);
        contentBinding.caseDataDisease.setEnabled(false);
        contentBinding.caseDataDiseaseDetails.setEnabled(false);
        contentBinding.caseDataPlagueType.setEnabled(false);
        contentBinding.caseDataDengueFeverType.setEnabled(false);
        contentBinding.caseDataHumanRabiesType.setEnabled(false);
    }
    // Set up port health visibilities
    if (UserRole.isPortHealthUser(ConfigProvider.getUser().getUserRoles())) {
        contentBinding.caseDataCaseOrigin.setVisibility(GONE);
        contentBinding.caseDataDisease.setVisibility(GONE);
        contentBinding.facilityOrHome.setVisibility(GONE);
        contentBinding.caseDataCommunity.setVisibility(GONE);
        contentBinding.facilityTypeFieldsLayout.setVisibility(GONE);
        contentBinding.caseDataHealthFacility.setVisibility(GONE);
        contentBinding.facilityTypeGroup.setRequired(false);
        contentBinding.caseDataFacilityType.setRequired(false);
        contentBinding.caseDataHealthFacility.setRequired(false);
        contentBinding.caseDataHealthFacilityDetails.setRequired(false);
    } else if (DatabaseHelper.getPointOfEntryDao().hasActiveEntriesInDistrict()) {
        if (record.getCaseOrigin() == CaseOrigin.IN_COUNTRY) {
            contentBinding.caseDataPointOfEntry.setRequired(false);
            contentBinding.caseDataPointOfEntry.setVisibility(GONE);
        } else {
            contentBinding.caseDataHealthFacility.setRequired(false);
        }
        contentBinding.caseDataCaseOrigin.addValueChangedListener(e -> {
            if (e.getValue() == CaseOrigin.IN_COUNTRY) {
                contentBinding.caseDataPointOfEntry.setVisibility(GONE);
                contentBinding.caseDataPointOfEntry.setRequired(false);
                contentBinding.caseDataPointOfEntry.setValue(null);
                contentBinding.caseDataHealthFacility.setRequired(true);
            } else {
                contentBinding.caseDataPointOfEntry.setVisibility(VISIBLE);
                contentBinding.caseDataHealthFacility.setRequired(false);
                contentBinding.caseDataPointOfEntry.setRequired(true);
            }
        });
    } else {
        contentBinding.caseDataCaseOrigin.setVisibility(GONE);
        contentBinding.caseDataPointOfEntry.setVisibility(GONE);
    }
}

Example 3 with Disease

use of de.symeda.sormas.api.Disease in project SORMAS-Project by hzi-braunschweig.

the class StartupShutdownService method createMissingDiseaseConfigurations.

private void createMissingDiseaseConfigurations() {
    List<DiseaseConfiguration> diseaseConfigurations = diseaseConfigurationService.getAll();
    List<Disease> configuredDiseases = diseaseConfigurations.stream().map(DiseaseConfiguration::getDisease).collect(Collectors.toList());
    Arrays.stream(Disease.values()).filter(d -> !configuredDiseases.contains(d)).forEach(d -> {
        DiseaseConfiguration configuration = DiseaseConfiguration.build(d);
        diseaseConfigurationService.ensurePersisted(configuration);
    });
}

Example 4 with Disease

use of de.symeda.sormas.api.Disease in project SORMAS-Project by hzi-braunschweig.

the class AggregateReportFacadeEjb method getIndexList.

@Override
public List<AggregatedCaseCountDto> getIndexList(AggregateReportCriteria criteria) {
    CriteriaBuilder cb = em.getCriteriaBuilder();
    CriteriaQuery<Object[]> cq = cb.createQuery(Object[].class);
    Root<AggregateReport> root = cq.from(AggregateReport.class);
    Predicate filter = service.createUserFilter(cb, cq, root);
    if (criteria != null) {
        Predicate criteriaFilter = service.createCriteriaFilter(criteria, cb, cq, root);
        filter = CriteriaBuilderHelper.and(cb, filter, criteriaFilter);
    }
    if (filter != null) {
        cq.where(filter);
    }
    cq.multiselect(root.get(AggregateReport.DISEASE), cb.sum(root.get(AggregateReport.NEW_CASES)), cb.sum(root.get(AggregateReport.LAB_CONFIRMATIONS)), cb.sum(root.get(AggregateReport.DEATHS)));
    cq.groupBy(root.get(AggregateReport.DISEASE));
    List<Object[]> resultList = em.createQuery(cq).getResultList();
    Map<Disease, AggregatedCaseCountDto> reportSet = new HashMap<>();
    for (Object[] result : resultList) {
        reportSet.put((Disease) result[0], new AggregatedCaseCountDto((Disease) result[0], ((Long) result[1]).intValue(), ((Long) result[2]).intValue(), ((Long) result[3]).intValue()));
    }
    for (Disease disease : diseaseConfigurationFacade.getAllDiseases(true, false, false)) {
        if (!reportSet.containsKey(disease)) {
            reportSet.put(disease, new AggregatedCaseCountDto(disease, 0, 0, 0));
        }
    }
    List<AggregatedCaseCountDto> reportList = new ArrayList<>(reportSet.values());
    reportList.sort(Comparator.comparing(r -> r.getDisease().toString()));
    return reportList;
}

Example 5 with Disease

use of de.symeda.sormas.api.Disease in project SORMAS-Project by hzi-braunschweig.

the class PathogenTestFacadeEjb method onPathogenTestChanged.

private void onPathogenTestChanged(PathogenTestDto existingPathogenTest, PathogenTest newPathogenTest) {
    // Send an email to all responsible supervisors when a new non-pending sample test is created or the status of
    // a formerly pending test result has changed
    final String sampleUuid = newPathogenTest.getSample().getUuid();
    final Sample sample = sampleService.getByUuid(sampleUuid);
    final Case caze = sample.getAssociatedCase();
    final Contact contact = sample.getAssociatedContact();
    final EventParticipant eventParticipant = sample.getAssociatedEventParticipant();
    Disease disease = null;
    Set<NotificationType> notificationTypes = new HashSet<>();
    List<Region> regions = new ArrayList<>();
    if (caze != null) {
        disease = caze.getDisease();
        notificationTypes.add(NotificationType.CASE_LAB_RESULT_ARRIVED);
        regions.addAll(JurisdictionHelper.getCaseRegions(caze));
    }
    if (contact != null) {
        disease = contact.getDisease() != null ? contact.getDisease() : contact.getCaze().getDisease();
        notificationTypes.add(NotificationType.CONTACT_LAB_RESULT_ARRIVED);
        regions.addAll(JurisdictionHelper.getContactRegions(contact));
    }
    if (eventParticipant != null) {
        disease = eventParticipant.getEvent().getDisease();
        notificationTypes.add(NotificationType.EVENT_PARTICIPANT_LAB_RESULT_ARRIVED);
        regions.add(eventParticipant.getEvent().getEventLocation().getRegion());
        if (disease == null) {
            sendMessageOnPathogenTestChanged(existingPathogenTest, newPathogenTest, null, notificationTypes, regions, MessageContents.CONTENT_LAB_RESULT_ARRIVED_EVENT_PARTICIPANT_NO_DISEASE, DataHelper.getShortUuid(eventParticipant.getUuid()));
        }
    }
    if (disease != null) {
        final String contentLabResultArrived = caze != null ? MessageContents.CONTENT_LAB_RESULT_ARRIVED : contact != null ? MessageContents.CONTENT_LAB_RESULT_ARRIVED_CONTACT : MessageContents.CONTENT_LAB_RESULT_ARRIVED_EVENT_PARTICIPANT;
        final String shortUuid = DataHelper.getShortUuid(caze != null ? caze.getUuid() : contact != null ? contact.getUuid() : eventParticipant.getUuid());
        sendMessageOnPathogenTestChanged(existingPathogenTest, newPathogenTest, disease, notificationTypes, regions, contentLabResultArrived, shortUuid);
    }
}