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Example 6 with VisitDto

use of de.symeda.sormas.api.visit.VisitDto in project SORMAS-Project by hzi-braunschweig.

the class VisitFacadeEjbPseudonymizationTest method testUpdatePseudonymized.

@Test
public void testUpdatePseudonymized() {
    VisitDto visit = createVisit(user2, person).visit;
    loginWith(observerUser);
    visit.setReportLat(null);
    visit.setReportLon(null);
    visit.setReportLatLonAccuracy(20F);
    visit.getSymptoms().setPatientIllLocation(null);
    visit.getSymptoms().setOtherHemorrhagicSymptomsText(null);
    getVisitFacade().saveVisit(visit);
    Visit updated = getVisitService().getByUuid(visit.getUuid());
    assertThat(updated.getReportLat(), is(46.432));
    assertThat(updated.getReportLon(), is(23.234));
    assertThat(updated.getReportLatLonAccuracy(), is(20f));
    Symptoms symptoms = getSymptomsService().getByUuid(visit.getSymptoms().getUuid());
    assertThat(symptoms.getPatientIllLocation(), is("Test ill location"));
    assertThat(symptoms.getOtherHemorrhagicSymptomsText(), is("OtherHemorrhagic"));
}
Also used : VisitDto(de.symeda.sormas.api.visit.VisitDto) Symptoms(de.symeda.sormas.backend.symptoms.Symptoms) AbstractBeanTest(de.symeda.sormas.backend.AbstractBeanTest) Test(org.junit.Test)

Example 7 with VisitDto

use of de.symeda.sormas.api.visit.VisitDto in project SORMAS-Project by hzi-braunschweig.

the class CaseFacadeEjb method mergeCase.

private void mergeCase(CaseDataDto leadCaseData, CaseDataDto otherCaseData, boolean cloning) {
    // 1 Merge Dtos
    // 1.1 Case
    copyDtoValues(leadCaseData, otherCaseData, cloning);
    save(leadCaseData, !cloning, true, true, false);
    // 1.2 Person - Only merge when the persons have different UUIDs
    if (!cloning && !DataHelper.equal(leadCaseData.getPerson().getUuid(), otherCaseData.getPerson().getUuid())) {
        PersonDto leadPerson = personFacade.getPersonByUuid(leadCaseData.getPerson().getUuid());
        PersonDto otherPerson = personFacade.getPersonByUuid(otherCaseData.getPerson().getUuid());
        personFacade.mergePerson(leadPerson, otherPerson);
    } else {
        assert (DataHelper.equal(leadCaseData.getPerson().getUuid(), otherCaseData.getPerson().getUuid()));
    }
    // 2 Change CaseReference
    Case leadCase = service.getByUuid(leadCaseData.getUuid());
    Case otherCase = service.getByUuid(otherCaseData.getUuid());
    // 2.1 Contacts
    List<Contact> contacts = contactService.findBy(new ContactCriteria().caze(otherCase.toReference()), null);
    for (Contact contact : contacts) {
        if (cloning) {
            ContactDto newContact = ContactDto.build(leadCase.toReference(), leadCase.getDisease(), leadCase.getDiseaseDetails(), leadCase.getDiseaseVariant());
            newContact.setPerson(new PersonReferenceDto(contact.getPerson().getUuid()));
            DtoHelper.copyDtoValues(newContact, contactFacade.toDto(contact), cloning);
            contactFacade.save(newContact, false, false);
        } else {
            // simply move existing entities to the merge target
            contact.setCaze(leadCase);
            contactService.ensurePersisted(contact);
        }
    }
    // 2.2 Samples
    List<Sample> samples = sampleService.findBy(new SampleCriteria().caze(otherCase.toReference()), null);
    for (Sample sample : samples) {
        if (cloning) {
            SampleDto newSample = SampleDto.build(sample.getReportingUser().toReference(), leadCase.toReference());
            DtoHelper.copyDtoValues(newSample, SampleFacadeEjb.toDto(sample), cloning);
            sampleFacade.saveSample(newSample, false, true, true);
            // 2.2.1 Pathogen Tests
            for (PathogenTest pathogenTest : sample.getPathogenTests()) {
                PathogenTestDto newPathogenTest = PathogenTestDto.build(newSample.toReference(), pathogenTest.getLabUser().toReference());
                DtoHelper.copyDtoValues(newPathogenTest, PathogenTestFacadeEjbLocal.toDto(pathogenTest), cloning);
                sampleTestFacade.savePathogenTest(newPathogenTest);
            }
            for (AdditionalTest additionalTest : sample.getAdditionalTests()) {
                AdditionalTestDto newAdditionalTest = AdditionalTestDto.build(newSample.toReference());
                DtoHelper.copyDtoValues(newAdditionalTest, AdditionalTestFacadeEjbLocal.toDto(additionalTest), cloning);
                additionalTestFacade.saveAdditionalTest(newAdditionalTest);
            }
        } else {
            // simply move existing entities to the merge target
            sample.setAssociatedCase(leadCase);
            sampleService.ensurePersisted(sample);
        }
    }
    // 2.3 Tasks
    if (!cloning) {
        // simply move existing entities to the merge target
        List<Task> tasks = taskService.findBy(new TaskCriteria().caze(new CaseReferenceDto(otherCase.getUuid())), true);
        for (Task task : tasks) {
            task.setCaze(leadCase);
            taskService.ensurePersisted(task);
        }
    }
    // 3 Change Therapy Reference
    // 3.1 Treatments
    List<Treatment> treatments = treatmentService.findBy(new TreatmentCriteria().therapy(new TherapyReferenceDto(otherCase.getTherapy().getUuid())));
    TherapyReferenceDto leadCaseTherapyReference = new TherapyReferenceDto(leadCase.getTherapy().getUuid());
    for (Treatment treatment : treatments) {
        if (cloning) {
            TreatmentDto newTreatment = TreatmentDto.build(leadCaseTherapyReference);
            DtoHelper.copyDtoValues(newTreatment, TreatmentFacadeEjb.toDto(treatment), cloning);
            treatmentFacade.saveTreatment(newTreatment);
        } else {
            // simply move existing entities to the merge target
            treatment.setTherapy(leadCase.getTherapy());
            treatmentService.ensurePersisted(treatment);
        }
    }
    // 3.2 Prescriptions
    List<Prescription> prescriptions = prescriptionService.findBy(new PrescriptionCriteria().therapy(new TherapyReferenceDto(otherCase.getTherapy().getUuid())));
    for (Prescription prescription : prescriptions) {
        if (cloning) {
            PrescriptionDto newPrescription = PrescriptionDto.buildPrescription(leadCaseTherapyReference);
            DtoHelper.copyDtoValues(newPrescription, PrescriptionFacadeEjb.toDto(prescription), cloning);
            prescriptionFacade.savePrescription(newPrescription);
        } else {
            // simply move existing entities to the merge target
            prescription.setTherapy(leadCase.getTherapy());
            prescriptionService.ensurePersisted(prescription);
        }
    }
    // 4 Change Clinical Course Reference
    // 4.1 Clinical Visits
    List<ClinicalVisit> clinicalVisits = clinicalVisitService.findBy(new ClinicalVisitCriteria().clinicalCourse(new ClinicalCourseReferenceDto(otherCase.getClinicalCourse().getUuid())));
    for (ClinicalVisit clinicalVisit : clinicalVisits) {
        if (cloning) {
            ClinicalVisitDto newClinicalVisit = ClinicalVisitDto.build(leadCaseData.getClinicalCourse().toReference(), leadCase.getDisease());
            DtoHelper.copyDtoValues(newClinicalVisit, ClinicalVisitFacadeEjb.toDto(clinicalVisit), cloning);
            clinicalVisitFacade.saveClinicalVisit(newClinicalVisit, leadCase.getUuid(), false);
        } else {
            // simply move existing entities to the merge target
            clinicalVisit.setClinicalCourse(leadCase.getClinicalCourse());
            clinicalVisitService.ensurePersisted(clinicalVisit);
        }
    }
    // (set the person and the disease of the visit, saveVisit does the rest)
    for (VisitDto otherVisit : otherCase.getVisits().stream().map(VisitFacadeEjb::toDto).collect(Collectors.toList())) {
        otherVisit.setPerson(leadCaseData.getPerson());
        otherVisit.setDisease(leadCaseData.getDisease());
        visitFacade.saveVisit(otherVisit);
    }
    // 6 Documents
    List<Document> documents = documentService.getRelatedToEntity(DocumentRelatedEntityType.CASE, otherCase.getUuid());
    for (Document document : documents) {
        document.setRelatedEntityUuid(leadCaseData.getUuid());
        documentService.ensurePersisted(document);
    }
    // 7 Persist Event links through eventparticipants
    Set<EventParticipant> eventParticipants = otherCase.getEventParticipants();
    for (EventParticipant eventParticipant : eventParticipants) {
        eventParticipant.setResultingCase(leadCase);
        eventParticipantService.ensurePersisted(eventParticipant);
    }
    otherCase.getEventParticipants().clear();
    // 8 Exposures - Make sure there are no two probable infection environments
    // if there are more than 2 exposures marked as probable infection environment, find the one that originates from the otherCase and set it to false
    // the one originating from the otherCase should always be found at the higher index
    List<Exposure> probableExposuresList = leadCase.getEpiData().getExposures().stream().filter(Exposure::isProbableInfectionEnvironment).collect(Collectors.toList());
    while (probableExposuresList.size() >= 2) {
        // should never be > 2, but still make sure to set all but one exposures to false
        probableExposuresList.get(probableExposuresList.size() - 1).setProbableInfectionEnvironment(false);
        exposureService.ensurePersisted(probableExposuresList.get(probableExposuresList.size() - 1));
        probableExposuresList.remove(probableExposuresList.size() - 1);
    }
    // 9 Reports
    List<SurveillanceReport> surveillanceReports = surveillanceReportService.getByCaseUuids(Collections.singletonList(otherCase.getUuid()));
    surveillanceReports.forEach(surveillanceReport -> {
        SurveillanceReportDto surveillanceReportDto = SurveillanceReportFacadeEjb.toDto(surveillanceReport);
        surveillanceReportDto.setCaze(leadCase.toReference());
        surveillanceReportFacade.saveSurveillanceReport(surveillanceReportDto);
    });
    // 10 Activity as case
    final EpiData otherEpiData = otherCase.getEpiData();
    if (otherEpiData != null && YesNoUnknown.YES == otherEpiData.getActivityAsCaseDetailsKnown() && CollectionUtils.isNotEmpty(otherEpiData.getActivitiesAsCase())) {
        final EpiData leadEpiData = leadCase.getEpiData();
        leadEpiData.setActivityAsCaseDetailsKnown(YesNoUnknown.YES);
        epiDataService.ensurePersisted(leadEpiData);
    }
    // Travel entries reference
    List<TravelEntry> travelEntries = travelEntryService.getAllByResultingCase(otherCase);
    travelEntries.forEach(t -> {
        t.setResultingCase(leadCase);
        travelEntryService.ensurePersisted(t);
    });
}
Also used : AdditionalTest(de.symeda.sormas.backend.sample.AdditionalTest) Prescription(de.symeda.sormas.backend.therapy.Prescription) TravelEntry(de.symeda.sormas.backend.travelentry.TravelEntry) PrescriptionCriteria(de.symeda.sormas.api.therapy.PrescriptionCriteria) Task(de.symeda.sormas.backend.task.Task) SurveillanceReport(de.symeda.sormas.backend.caze.surveillancereport.SurveillanceReport) PersonReferenceDto(de.symeda.sormas.api.person.PersonReferenceDto) ClinicalVisitCriteria(de.symeda.sormas.api.clinicalcourse.ClinicalVisitCriteria) PathogenTestDto(de.symeda.sormas.api.sample.PathogenTestDto) Document(de.symeda.sormas.backend.document.Document) TreatmentDto(de.symeda.sormas.api.therapy.TreatmentDto) ContactCriteria(de.symeda.sormas.api.contact.ContactCriteria) ContactDto(de.symeda.sormas.api.contact.ContactDto) PrescriptionDto(de.symeda.sormas.api.therapy.PrescriptionDto) TreatmentCriteria(de.symeda.sormas.api.therapy.TreatmentCriteria) TaskCriteria(de.symeda.sormas.api.task.TaskCriteria) EpiData(de.symeda.sormas.backend.epidata.EpiData) ClinicalCourseReferenceDto(de.symeda.sormas.api.clinicalcourse.ClinicalCourseReferenceDto) PersonDto(de.symeda.sormas.api.person.PersonDto) CasePersonDto(de.symeda.sormas.api.caze.CasePersonDto) Sample(de.symeda.sormas.backend.sample.Sample) SampleCriteria(de.symeda.sormas.api.sample.SampleCriteria) TherapyReferenceDto(de.symeda.sormas.api.therapy.TherapyReferenceDto) Exposure(de.symeda.sormas.backend.exposure.Exposure) PathogenTest(de.symeda.sormas.backend.sample.PathogenTest) ClinicalVisit(de.symeda.sormas.backend.clinicalcourse.ClinicalVisit) Contact(de.symeda.sormas.backend.contact.Contact) Treatment(de.symeda.sormas.backend.therapy.Treatment) ClinicalVisitDto(de.symeda.sormas.api.clinicalcourse.ClinicalVisitDto) VisitDto(de.symeda.sormas.api.visit.VisitDto) ClinicalVisitDto(de.symeda.sormas.api.clinicalcourse.ClinicalVisitDto) SurveillanceReportDto(de.symeda.sormas.api.caze.surveillancereport.SurveillanceReportDto) SampleDto(de.symeda.sormas.api.sample.SampleDto) CaseReferenceDto(de.symeda.sormas.api.caze.CaseReferenceDto) EventParticipant(de.symeda.sormas.backend.event.EventParticipant) AdditionalTestDto(de.symeda.sormas.api.sample.AdditionalTestDto)

Example 8 with VisitDto

use of de.symeda.sormas.api.visit.VisitDto in project SORMAS-Project by hzi-braunschweig.

the class CaseFacadeEjbTest method testMergeCase.

@Test
public void testMergeCase() throws IOException {
    useNationalUserLogin();
    // 1. Create
    // Create leadCase
    UserDto leadUser = creator.createUser("", "", "", "First", "User");
    UserReferenceDto leadUserReference = new UserReferenceDto(leadUser.getUuid());
    PersonDto leadPerson = creator.createPerson("Alex", "Miller");
    PersonReferenceDto leadPersonReference = new PersonReferenceDto(leadPerson.getUuid());
    RDCF leadRdcf = creator.createRDCF();
    CaseDataDto leadCase = creator.createCase(leadUserReference, leadPersonReference, Disease.DENGUE, CaseClassification.SUSPECT, InvestigationStatus.PENDING, new Date(), leadRdcf, (c) -> {
        c.setAdditionalDetails("Test additional details");
        c.setFollowUpComment("Test followup comment");
    });
    leadCase.setClinicianEmail("mail");
    leadCase.getEpiData().setActivityAsCaseDetailsKnown(YesNoUnknown.NO);
    getCaseFacade().save(leadCase);
    VisitDto leadVisit = creator.createVisit(leadCase.getDisease(), leadCase.getPerson(), leadCase.getReportDate());
    leadVisit.getSymptoms().setAnorexiaAppetiteLoss(SymptomState.YES);
    getVisitFacade().saveVisit(leadVisit);
    // Create otherCase
    UserDto otherUser = creator.createUser("", "", "", "Second", "User");
    UserReferenceDto otherUserReference = new UserReferenceDto(otherUser.getUuid());
    PersonDto otherPerson = creator.createPerson("Max", "Smith");
    otherPerson.setBirthWeight(2);
    getPersonFacade().savePerson(otherPerson);
    PersonReferenceDto otherPersonReference = new PersonReferenceDto(otherPerson.getUuid());
    RDCF otherRdcf = creator.createRDCF("Reg2", "Dis2", "Comm2", "Fac2", "Poe2");
    CaseDataDto otherCase = creator.createCase(otherUserReference, otherPersonReference, Disease.CHOLERA, CaseClassification.SUSPECT, InvestigationStatus.PENDING, new Date(), otherRdcf, (c) -> {
        c.setAdditionalDetails("Test other additional details");
        c.setFollowUpComment("Test other followup comment");
    });
    otherCase.setClinicianName("name");
    CaseReferenceDto otherCaseReference = getCaseFacade().getReferenceByUuid(otherCase.getUuid());
    ContactDto contact = creator.createContact(otherUserReference, otherUserReference, otherPersonReference, otherCase, new Date(), new Date(), null);
    Region region = creator.createRegion("");
    District district = creator.createDistrict("", region);
    SampleDto sample = creator.createSample(otherCaseReference, otherUserReference, creator.createFacility("", region, district, creator.createCommunity("", district)));
    TaskDto task = creator.createTask(TaskContext.CASE, TaskType.CASE_INVESTIGATION, TaskStatus.PENDING, otherCaseReference, new ContactReferenceDto(), new EventReferenceDto(), new Date(), otherUserReference);
    TreatmentDto treatment = creator.createTreatment(otherCase);
    PrescriptionDto prescription = creator.createPrescription(otherCase);
    ClinicalVisitDto visit = creator.createClinicalVisit(otherCase);
    otherCase.getEpiData().setActivityAsCaseDetailsKnown(YesNoUnknown.YES);
    final ArrayList<ActivityAsCaseDto> otherActivitiesAsCase = new ArrayList<>();
    ActivityAsCaseDto activityAsCaseDto = new ActivityAsCaseDto();
    activityAsCaseDto.setActivityAsCaseType(ActivityAsCaseType.GATHERING);
    otherActivitiesAsCase.add(activityAsCaseDto);
    otherCase.getEpiData().setActivitiesAsCase(otherActivitiesAsCase);
    getCaseFacade().save(otherCase);
    VisitDto otherVisit = creator.createVisit(otherCase.getDisease(), otherCase.getPerson(), otherCase.getReportDate());
    otherVisit.getSymptoms().setAbdominalPain(SymptomState.YES);
    getVisitFacade().saveVisit(otherVisit);
    EventDto event = creator.createEvent(otherUserReference);
    event.setDisease(otherCase.getDisease());
    getEventFacade().save(event);
    EventParticipantDto otherCaseEventParticipant = creator.createEventParticipant(event.toReference(), otherPerson, otherUserReference);
    otherCaseEventParticipant.setResultingCase(otherCaseReference);
    getEventParticipantFacade().saveEventParticipant(otherCaseEventParticipant);
    creator.createSurveillanceReport(otherUserReference, otherCaseReference);
    TravelEntryDto travelEntry = creator.createTravelEntry(otherPersonReference, otherUserReference, otherCase.getDisease(), otherRdcf.region, otherRdcf.district, otherRdcf.pointOfEntry);
    travelEntry.setResultingCase(otherCaseReference);
    travelEntry = getTravelEntryFacade().save(travelEntry);
    DocumentDto document = creator.createDocument(leadUserReference, "document.pdf", "application/pdf", 42L, DocumentRelatedEntityType.CASE, leadCase.getUuid(), "content".getBytes(StandardCharsets.UTF_8));
    DocumentDto otherDocument = creator.createDocument(leadUserReference, "other_document.pdf", "application/pdf", 42L, DocumentRelatedEntityType.CASE, otherCase.getUuid(), "other content".getBytes(StandardCharsets.UTF_8));
    // 2. Merge
    getCaseFacade().mergeCase(leadCase.getUuid(), otherCase.getUuid());
    // 3. Test
    CaseDataDto mergedCase = getCaseFacade().getCaseDataByUuid(leadCase.getUuid());
    // Check no values
    assertNull(mergedCase.getClassificationComment());
    // Check 'lead and other have different values'
    assertEquals(leadCase.getDisease(), mergedCase.getDisease());
    // Check 'lead has value, other has not'
    assertEquals(leadCase.getClinicianEmail(), mergedCase.getClinicianEmail());
    // Check 'lead has no value, other has'
    assertEquals(otherCase.getClinicianName(), mergedCase.getClinicianName());
    PersonDto mergedPerson = getPersonFacade().getPersonByUuid(mergedCase.getPerson().getUuid());
    // Check no values
    assertNull(mergedPerson.getBirthdateDD());
    // Check 'lead and other have different values'
    assertEquals(leadCase.getPerson().getFirstName(), mergedPerson.getFirstName());
    // Check 'lead has value, other has not'
    assertEquals(leadCase.getPerson().getLastName(), mergedPerson.getLastName());
    // Check 'lead has no value, other has'
    assertEquals(otherPerson.getBirthWeight(), mergedPerson.getBirthWeight());
    // Check merge comments
    assertEquals("Test additional details Test other additional details", mergedCase.getAdditionalDetails());
    assertEquals("Test followup comment Test other followup comment", mergedCase.getFollowUpComment());
    // 4. Test Reference Changes
    // 4.1 Contacts
    List<String> contactUuids = new ArrayList<>();
    contactUuids.add(contact.getUuid());
    assertEquals(leadCase.getUuid(), getContactFacade().getByUuids(contactUuids).get(0).getCaze().getUuid());
    // 4.2 Samples
    List<String> sampleUuids = new ArrayList<>();
    sampleUuids.add(sample.getUuid());
    assertEquals(leadCase.getUuid(), getSampleFacade().getByUuids(sampleUuids).get(0).getAssociatedCase().getUuid());
    // 4.3 Tasks
    List<String> taskUuids = new ArrayList<>();
    taskUuids.add(task.getUuid());
    assertEquals(leadCase.getUuid(), getTaskFacade().getByUuids(taskUuids).get(0).getCaze().getUuid());
    // 4.4 Treatments
    List<String> treatmentUuids = new ArrayList<>();
    treatmentUuids.add(treatment.getUuid());
    assertEquals(leadCase.getTherapy().getUuid(), getTreatmentFacade().getByUuids(treatmentUuids).get(0).getTherapy().getUuid());
    // 4.5 Prescriptions
    List<String> prescriptionUuids = new ArrayList<>();
    prescriptionUuids.add(prescription.getUuid());
    assertEquals(leadCase.getTherapy().getUuid(), getPrescriptionFacade().getByUuids(prescriptionUuids).get(0).getTherapy().getUuid());
    // 4.6 Clinical Visits
    List<String> visitUuids = new ArrayList<>();
    visitUuids.add(visit.getUuid());
    assertEquals(leadCase.getClinicalCourse().getUuid(), getClinicalVisitFacade().getByUuids(visitUuids).get(0).getClinicalCourse().getUuid());
    // 4.7 Visits;
    List<String> mergedVisits = getVisitFacade().getIndexList(new VisitCriteria().caze(mergedCase.toReference()), null, null, null).stream().map(VisitIndexDto::getUuid).collect(Collectors.toList());
    assertEquals(2, mergedVisits.size());
    assertTrue(mergedVisits.contains(leadVisit.getUuid()));
    assertTrue(mergedVisits.contains(otherVisit.getUuid()));
    // and symptoms
    assertEquals(SymptomState.YES, mergedCase.getSymptoms().getAbdominalPain());
    assertEquals(SymptomState.YES, mergedCase.getSymptoms().getAnorexiaAppetiteLoss());
    assertTrue(mergedCase.getSymptoms().getSymptomatic());
    // 4.8 Linked Events
    assertEquals(1, getEventFacade().count(new EventCriteria().caze(mergedCase.toReference())));
    // 4.8 Linked Surveillance Reports
    List<SurveillanceReportDto> surveillanceReportList = getSurveillanceReportFacade().getByCaseUuids(Collections.singletonList(mergedCase.getUuid()));
    MatcherAssert.assertThat(surveillanceReportList, hasSize(1));
    // 5 Documents
    List<DocumentDto> mergedDocuments = getDocumentFacade().getDocumentsRelatedToEntity(DocumentRelatedEntityType.CASE, leadCase.getUuid());
    assertEquals(2, mergedDocuments.size());
    List<String> documentUuids = mergedDocuments.stream().map(DocumentDto::getUuid).collect(Collectors.toList());
    assertTrue(documentUuids.contains(document.getUuid()));
    assertTrue(documentUuids.contains(otherDocument.getUuid()));
    // 10 Activities as case
    final EpiDataDto epiData = mergedCase.getEpiData();
    assertEquals(YesNoUnknown.YES, epiData.getActivityAsCaseDetailsKnown());
    final List<ActivityAsCaseDto> activitiesAsCase = epiData.getActivitiesAsCase();
    assertEquals(1, activitiesAsCase.size());
    assertEquals(ActivityAsCaseType.GATHERING, activitiesAsCase.get(0).getActivityAsCaseType());
    // Travel entry
    travelEntry = getTravelEntryFacade().getByUuid(travelEntry.getUuid());
    assertEquals(mergedCase.toReference(), travelEntry.getResultingCase());
}
Also used : UserDto(de.symeda.sormas.api.user.UserDto) PersonReferenceDto(de.symeda.sormas.api.person.PersonReferenceDto) ArrayList(java.util.ArrayList) Matchers.isEmptyOrNullString(org.hamcrest.Matchers.isEmptyOrNullString) EventCriteria(de.symeda.sormas.api.event.EventCriteria) TreatmentDto(de.symeda.sormas.api.therapy.TreatmentDto) ActivityAsCaseDto(de.symeda.sormas.api.activityascase.ActivityAsCaseDto) ContactDto(de.symeda.sormas.api.contact.ContactDto) PrescriptionDto(de.symeda.sormas.api.therapy.PrescriptionDto) VisitCriteria(de.symeda.sormas.api.visit.VisitCriteria) EpiDataDto(de.symeda.sormas.api.epidata.EpiDataDto) CaseDataDto(de.symeda.sormas.api.caze.CaseDataDto) CasePersonDto(de.symeda.sormas.api.caze.CasePersonDto) PersonDto(de.symeda.sormas.api.person.PersonDto) TravelEntryDto(de.symeda.sormas.api.travelentry.TravelEntryDto) EventDto(de.symeda.sormas.api.event.EventDto) EventParticipantDto(de.symeda.sormas.api.event.EventParticipantDto) TaskDto(de.symeda.sormas.api.task.TaskDto) Date(java.util.Date) LocalDate(java.time.LocalDate) UserReferenceDto(de.symeda.sormas.api.user.UserReferenceDto) RDCF(de.symeda.sormas.backend.TestDataCreator.RDCF) EventReferenceDto(de.symeda.sormas.api.event.EventReferenceDto) ClinicalVisitDto(de.symeda.sormas.api.clinicalcourse.ClinicalVisitDto) ContactReferenceDto(de.symeda.sormas.api.contact.ContactReferenceDto) DocumentDto(de.symeda.sormas.api.document.DocumentDto) Region(de.symeda.sormas.backend.infrastructure.region.Region) ClinicalVisitDto(de.symeda.sormas.api.clinicalcourse.ClinicalVisitDto) VisitDto(de.symeda.sormas.api.visit.VisitDto) SurveillanceReportDto(de.symeda.sormas.api.caze.surveillancereport.SurveillanceReportDto) District(de.symeda.sormas.backend.infrastructure.district.District) SampleDto(de.symeda.sormas.api.sample.SampleDto) CaseReferenceDto(de.symeda.sormas.api.caze.CaseReferenceDto) AbstractBeanTest(de.symeda.sormas.backend.AbstractBeanTest) Test(org.junit.Test)

Example 9 with VisitDto

use of de.symeda.sormas.api.visit.VisitDto in project SORMAS-Project by hzi-braunschweig.

the class ContactFacadeEjbTest method testCountMaximumFollowUpDays.

@Test
public void testCountMaximumFollowUpDays() {
    RDCFEntities rdcf = creator.createRDCFEntities("Region", "District", "Community", "Facility");
    UserDto user = creator.createUser(rdcf.region.getUuid(), rdcf.district.getUuid(), rdcf.facility.getUuid(), "Surv", "Sup", UserRole.SURVEILLANCE_SUPERVISOR);
    PersonDto cazePerson = creator.createPerson("Case", "Person");
    CaseDataDto caze = creator.createCase(user.toReference(), cazePerson.toReference(), Disease.EVD, CaseClassification.PROBABLE, InvestigationStatus.PENDING, new Date(), rdcf);
    PersonDto contactPerson = creator.createPerson("Contact", "Person");
    creator.createContact(user.toReference(), user.toReference(), contactPerson.toReference(), caze, new Date(), new Date(), null);
    VisitDto visit = creator.createVisit(caze.getDisease(), contactPerson.toReference(), new Date(), VisitStatus.COOPERATIVE, VisitOrigin.USER);
    visit.getSymptoms().setAbdominalPain(SymptomState.YES);
    getVisitFacade().saveVisit(visit);
    PersonDto contactPerson2 = creator.createPerson("Contact2", "Person2");
    creator.createContact(user.toReference(), user.toReference(), contactPerson2.toReference(), caze, new Date(), new Date(), null);
    VisitDto visit21 = creator.createVisit(caze.getDisease(), contactPerson2.toReference(), new Date(), VisitStatus.COOPERATIVE, VisitOrigin.USER);
    visit21.getSymptoms().setAbdominalPain(SymptomState.YES);
    getVisitFacade().saveVisit(visit21);
    VisitDto visit22 = creator.createVisit(caze.getDisease(), contactPerson2.toReference(), new Date(), VisitStatus.COOPERATIVE, VisitOrigin.USER);
    visit22.getSymptoms().setAgitation(SymptomState.YES);
    getVisitFacade().saveVisit(visit22);
    PersonDto contactPerson3 = creator.createPerson("Contact3", "Person3");
    creator.createContact(user.toReference(), user.toReference(), contactPerson3.toReference(), caze, new Date(), new Date(), null);
    for (int i = 0; i < 10; i++) {
        creator.createVisit(caze.getDisease(), contactPerson3.toReference(), new Date(), VisitStatus.COOPERATIVE, VisitOrigin.USER);
    }
    assertEquals(10, getContactFacade().countMaximumFollowUpDays(null));
}
Also used : RDCFEntities(de.symeda.sormas.backend.TestDataCreator.RDCFEntities) CaseDataDto(de.symeda.sormas.api.caze.CaseDataDto) PersonDto(de.symeda.sormas.api.person.PersonDto) UserDto(de.symeda.sormas.api.user.UserDto) VisitDto(de.symeda.sormas.api.visit.VisitDto) Date(java.util.Date) LocalDate(java.time.LocalDate) AbstractBeanTest(de.symeda.sormas.backend.AbstractBeanTest) Test(org.junit.Test)

Example 10 with VisitDto

use of de.symeda.sormas.api.visit.VisitDto in project SORMAS-Project by hzi-braunschweig.

the class ContactFacadeEjbTest method testUpdateContactVisitAssociations.

@Test
public void testUpdateContactVisitAssociations() {
    UserDto user = creator.createUser(creator.createRDCFEntities(), UserRole.SURVEILLANCE_SUPERVISOR);
    PersonDto person = creator.createPerson();
    VisitDto visit = creator.createVisit(Disease.EVD, person.toReference());
    ContactDto contact = creator.createContact(user.toReference(), person.toReference());
    Contact contactEntity = getContactService().getByUuid(contact.getUuid());
    Visit visitEntity = getVisitService().getByUuid(visit.getUuid());
    // Saved contact should have visit association
    assertThat(getVisitService().getAllByContact(contactEntity), hasSize(1));
    // Updating the contact but not changing the report date or last contact date should not alter the association
    contact.setDescription("Description");
    getContactFacade().save(contact);
    assertThat(getVisitService().getAllByContact(contactEntity), hasSize(1));
    // Changing the report date to a value beyond the threshold should remove the association
    contact.setReportDateTime(DateHelper.addDays(visit.getVisitDateTime(), FollowUpLogic.ALLOWED_DATE_OFFSET + 20));
    getContactFacade().save(contact);
    assertThat(getVisitService().getAllByContact(contactEntity), empty());
    // Changing the report date back to a value in the threshold should re-add the association
    contact.setReportDateTime(new Date());
    getContactFacade().save(contact);
    assertThat(getVisitService().getAllByContact(contactEntity), hasSize(1));
    // Adding another contact that matches the visit person, disease and time frame should increase the collection size
    ContactDto contact2 = creator.createContact(user.toReference(), person.toReference());
    assertThat(getContactService().getAllByVisit(visitEntity), hasSize(2));
    // Adding another contact with the same person and disease, but an incompatible time frame should not increase the collection size
    creator.createContact(user.toReference(), person.toReference(), DateHelper.addDays(visit.getVisitDateTime(), FollowUpLogic.ALLOWED_DATE_OFFSET + 1));
    assertThat(getContactService().getAllByVisit(visitEntity), hasSize(2));
    // Adding another contact that is compatible to the time frame, but has a different person and/or disease should not increase the collection size
    PersonDto person2 = creator.createPerson();
    creator.createContact(user.toReference(), person2.toReference());
    creator.createContact(user.toReference(), person.toReference(), Disease.CSM);
    assertThat(getContactService().getAllByVisit(visitEntity), hasSize(2));
    // Changing the contact disease should decrease the collection size
    contact2.setDisease(Disease.CSM);
    getContactFacade().save(contact2);
    assertThat(getContactService().getAllByVisit(visitEntity), hasSize(1));
}
Also used : PersonDto(de.symeda.sormas.api.person.PersonDto) Visit(de.symeda.sormas.backend.visit.Visit) UserDto(de.symeda.sormas.api.user.UserDto) SimilarContactDto(de.symeda.sormas.api.contact.SimilarContactDto) MapContactDto(de.symeda.sormas.api.contact.MapContactDto) ContactDto(de.symeda.sormas.api.contact.ContactDto) VisitDto(de.symeda.sormas.api.visit.VisitDto) Date(java.util.Date) LocalDate(java.time.LocalDate) AbstractBeanTest(de.symeda.sormas.backend.AbstractBeanTest) Test(org.junit.Test)

Aggregations

VisitDto (de.symeda.sormas.api.visit.VisitDto)44 PersonDto (de.symeda.sormas.api.person.PersonDto)27 Test (org.junit.Test)25 AbstractBeanTest (de.symeda.sormas.backend.AbstractBeanTest)24 Date (java.util.Date)24 ContactDto (de.symeda.sormas.api.contact.ContactDto)22 CaseDataDto (de.symeda.sormas.api.caze.CaseDataDto)20 UserDto (de.symeda.sormas.api.user.UserDto)19 ExternalVisitDto (de.symeda.sormas.api.visit.ExternalVisitDto)14 LocalDate (java.time.LocalDate)11 UserReferenceDto (de.symeda.sormas.api.user.UserReferenceDto)10 PersonReferenceDto (de.symeda.sormas.api.person.PersonReferenceDto)8 CaseReferenceDto (de.symeda.sormas.api.caze.CaseReferenceDto)7 SimilarContactDto (de.symeda.sormas.api.contact.SimilarContactDto)7 VisitCriteria (de.symeda.sormas.api.visit.VisitCriteria)7 ArrayList (java.util.ArrayList)7 MapContactDto (de.symeda.sormas.api.contact.MapContactDto)6 ClinicalVisitDto (de.symeda.sormas.api.clinicalcourse.ClinicalVisitDto)5 ContactReferenceDto (de.symeda.sormas.api.contact.ContactReferenceDto)5 SampleDto (de.symeda.sormas.api.sample.SampleDto)4