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Example 1 with Selection

use of de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.Selection in project webanno by webanno.

the class AnnotationDetailEditorPanel method createNewRelationAnnotation.

private void createNewRelationAnnotation(ArcAdapter aAdapter, JCas aJCas) throws AnnotationException {
    LOG.trace("createNewRelationAnnotation()");
    AnnotatorState state = getModelObject();
    Selection selection = state.getSelection();
    AnnotationFS originFs = selectByAddr(aJCas, selection.getOrigin());
    AnnotationFS targetFs = selectByAddr(aJCas, selection.getTarget());
    // Creating a relation
    AnnotationFS arc = aAdapter.add(originFs, targetFs, aJCas, state.getWindowBeginOffset(), state.getWindowEndOffset());
    selection.selectArc(new VID(arc), originFs, targetFs);
}
Also used : VID(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.VID) AnnotationFS(org.apache.uima.cas.text.AnnotationFS) Selection(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.Selection) AnnotatorState(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.AnnotatorState)

Example 2 with Selection

use of de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.Selection in project webanno by webanno.

the class AnnotationDetailEditorPanel method createNewChainLinkAnnotation.

private void createNewChainLinkAnnotation(ChainAdapter aAdapter, JCas aJCas) {
    LOG.trace("createNewChainLinkAnnotation()");
    AnnotatorState state = getModelObject();
    Selection selection = state.getSelection();
    AnnotationFS originFs = selectByAddr(aJCas, selection.getOrigin());
    AnnotationFS targetFs = selectByAddr(aJCas, selection.getTarget());
    // Creating a new chain link
    int addr = aAdapter.addArc(aJCas, originFs, targetFs);
    selection.selectArc(new VID(addr), originFs, targetFs);
}
Also used : VID(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.VID) AnnotationFS(org.apache.uima.cas.text.AnnotationFS) Selection(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.Selection) AnnotatorState(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.AnnotatorState)

Example 3 with Selection

use of de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.Selection in project webanno by webanno.

the class AnnotationDetailEditorPanel method createNewChainElement.

private void createNewChainElement(ChainAdapter aAdapter, JCas aJCas) throws AnnotationException {
    LOG.trace("createNewChainElement()");
    AnnotatorState state = getModelObject();
    Selection selection = state.getSelection();
    List<FeatureState> featureStates = state.getFeatureStates();
    for (FeatureState featureState : featureStates) {
        Serializable spanValue = aAdapter.getSpan(aJCas, selection.getBegin(), selection.getEnd(), featureState.feature, null);
        if (spanValue != null) {
            // allow modification for forward annotation
            if (state.isForwardAnnotation()) {
                featureState.value = spanValue;
                featureStates.get(0).value = spanValue;
                String selectedTag = annotationFeatureForm.getBindTags().entrySet().stream().filter(e -> e.getValue().equals(spanValue)).map(Map.Entry::getKey).findFirst().orElse(null);
                annotationFeatureForm.setSelectedTag(selectedTag);
            }
        }
    }
    selection.setAnnotation(new VID(aAdapter.addSpan(aJCas, selection.getBegin(), selection.getEnd())));
    selection.setText(aJCas.getDocumentText().substring(selection.getBegin(), selection.getEnd()));
}
Also used : TypeAdapter(de.tudarmstadt.ukp.clarin.webanno.api.annotation.adapter.TypeAdapter) SpringBean(org.apache.wicket.spring.injection.annot.SpringBean) SpanAdapter(de.tudarmstadt.ukp.clarin.webanno.api.annotation.adapter.SpanAdapter) LoggerFactory(org.slf4j.LoggerFactory) NoResultException(javax.persistence.NoResultException) WebAnnoCasUtil(de.tudarmstadt.ukp.clarin.webanno.api.annotation.util.WebAnnoCasUtil) AnnotationException(de.tudarmstadt.ukp.clarin.webanno.api.annotation.exception.AnnotationException) LinkMode(de.tudarmstadt.ukp.clarin.webanno.model.LinkMode) StringUtils(org.apache.commons.lang3.StringUtils) Type(org.apache.uima.cas.Type) Selection(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.Selection) AnnotationEditorExtensionRegistry(de.tudarmstadt.ukp.clarin.webanno.api.annotation.AnnotationEditorExtensionRegistry) Map(java.util.Map) AjaxRequestTarget(org.apache.wicket.ajax.AjaxRequestTarget) WebAnnoCasUtil.isSame(de.tudarmstadt.ukp.clarin.webanno.api.annotation.util.WebAnnoCasUtil.isSame) FeatureStructure(org.apache.uima.cas.FeatureStructure) IModel(org.apache.wicket.model.IModel) WebAnnoCasUtil.getSentenceNumber(de.tudarmstadt.ukp.clarin.webanno.api.annotation.util.WebAnnoCasUtil.getSentenceNumber) UIMAException(org.apache.uima.UIMAException) JCas(org.apache.uima.jcas.JCas) Tag(de.tudarmstadt.ukp.clarin.webanno.model.Tag) MultiValueMode(de.tudarmstadt.ukp.clarin.webanno.model.MultiValueMode) WebAnnoConst(de.tudarmstadt.ukp.clarin.webanno.api.WebAnnoConst) Set(java.util.Set) Component(org.apache.wicket.Component) ValuesGenerator(de.tudarmstadt.ukp.clarin.webanno.constraints.evaluator.ValuesGenerator) IFeedback(org.apache.wicket.feedback.IFeedback) Serializable(java.io.Serializable) ArcAdapter(de.tudarmstadt.ukp.clarin.webanno.api.annotation.adapter.ArcAdapter) Objects(java.util.Objects) List(java.util.List) TypeUtil(de.tudarmstadt.ukp.clarin.webanno.api.annotation.util.TypeUtil) AnnotationLayer(de.tudarmstadt.ukp.clarin.webanno.model.AnnotationLayer) ExceptionUtils(org.apache.commons.lang3.exception.ExceptionUtils) AnnotationFS(org.apache.uima.cas.text.AnnotationFS) ProjectService(de.tudarmstadt.ukp.clarin.webanno.api.ProjectService) SourceDocumentState(de.tudarmstadt.ukp.clarin.webanno.model.SourceDocumentState) AnnotatorState(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.AnnotatorState) WebAnnoCasUtil.selectByAddr(de.tudarmstadt.ukp.clarin.webanno.api.annotation.util.WebAnnoCasUtil.selectByAddr) CAS(org.apache.uima.cas.CAS) Feature(org.apache.uima.cas.Feature) Mode(de.tudarmstadt.ukp.clarin.webanno.model.Mode) PossibleValue(de.tudarmstadt.ukp.clarin.webanno.constraints.evaluator.PossibleValue) WebAnnoCasUtil.setFeature(de.tudarmstadt.ukp.clarin.webanno.api.annotation.util.WebAnnoCasUtil.setFeature) ArrayList(java.util.ArrayList) HashSet(java.util.HashSet) AnnotationSchemaService(de.tudarmstadt.ukp.clarin.webanno.api.AnnotationSchemaService) Project(de.tudarmstadt.ukp.clarin.webanno.model.Project) AjaxFormValidatingBehavior(org.apache.wicket.ajax.form.AjaxFormValidatingBehavior) LinkWithRoleModel(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.LinkWithRoleModel) WebAnnoCasUtil.getAddr(de.tudarmstadt.ukp.clarin.webanno.api.annotation.util.WebAnnoCasUtil.getAddr) DocumentService(de.tudarmstadt.ukp.clarin.webanno.api.DocumentService) FeatureState(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.FeatureState) Logger(org.slf4j.Logger) Iterator(java.util.Iterator) WebAnnoCasUtil.selectAt(de.tudarmstadt.ukp.clarin.webanno.api.annotation.util.WebAnnoCasUtil.selectAt) CurationDocumentService(de.tudarmstadt.ukp.clarin.webanno.curation.storage.CurationDocumentService) AnnotationActionHandler(de.tudarmstadt.ukp.clarin.webanno.api.annotation.action.AnnotationActionHandler) IOException(java.io.IOException) CasUtil(org.apache.uima.fit.util.CasUtil) Panel(org.apache.wicket.markup.html.panel.Panel) AnnotationFeature(de.tudarmstadt.ukp.clarin.webanno.model.AnnotationFeature) Evaluator(de.tudarmstadt.ukp.clarin.webanno.constraints.evaluator.Evaluator) ChainAdapter(de.tudarmstadt.ukp.clarin.webanno.api.annotation.adapter.ChainAdapter) VID(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.VID) RulesIndicator(de.tudarmstadt.ukp.clarin.webanno.constraints.evaluator.RulesIndicator) VID(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.VID) Serializable(java.io.Serializable) Selection(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.Selection) AnnotatorState(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.AnnotatorState) FeatureState(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.FeatureState)

Example 4 with Selection

use of de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.Selection in project webanno by webanno.

the class AnnotationDetailEditorPanel method createNewSpanAnnotation.

private void createNewSpanAnnotation(AjaxRequestTarget aTarget, SpanAdapter aAdapter, JCas aJCas) throws IOException, AnnotationException {
    LOG.trace("createNewSpanAnnotation()");
    AnnotatorState state = getModelObject();
    Selection selection = state.getSelection();
    List<FeatureState> featureStates = state.getFeatureStates();
    if ((aAdapter.isAllowMultipleToken() || aAdapter.isLockToTokenOffsets()) && selection.getBegin() == selection.getEnd()) {
        throw new AnnotationException("Cannot create zero-width annotation on layers that lock to token boundaries.");
    }
    for (FeatureState featureState : featureStates) {
        Serializable spanValue = aAdapter.getSpan(aJCas, selection.getBegin(), selection.getEnd(), featureState.feature, null);
        if (spanValue != null) {
            // allow modification for forward annotation
            if (state.isForwardAnnotation()) {
                featureState.value = spanValue;
                featureStates.get(0).value = spanValue;
                String selectedTag = annotationFeatureForm.getBindTags().entrySet().stream().filter(e -> e.getValue().equals(spanValue)).map(Map.Entry::getKey).findFirst().orElse(null);
                annotationFeatureForm.setSelectedTag(selectedTag);
            } else {
                actionClear(aTarget);
                throw new AnnotationException("Cannot create another annotation of layer [" + state.getSelectedAnnotationLayer().getUiName() + "] at this" + " location - stacking is not enabled for this layer.");
            }
        }
    }
    int annoId = aAdapter.add(state, aJCas, selection.getBegin(), selection.getEnd());
    AnnotationFS annoFs = WebAnnoCasUtil.selectByAddr(aJCas, annoId);
    selection.selectSpan(new VID(annoId), aJCas, annoFs.getBegin(), annoFs.getEnd());
}
Also used : TypeAdapter(de.tudarmstadt.ukp.clarin.webanno.api.annotation.adapter.TypeAdapter) SpringBean(org.apache.wicket.spring.injection.annot.SpringBean) SpanAdapter(de.tudarmstadt.ukp.clarin.webanno.api.annotation.adapter.SpanAdapter) LoggerFactory(org.slf4j.LoggerFactory) NoResultException(javax.persistence.NoResultException) WebAnnoCasUtil(de.tudarmstadt.ukp.clarin.webanno.api.annotation.util.WebAnnoCasUtil) AnnotationException(de.tudarmstadt.ukp.clarin.webanno.api.annotation.exception.AnnotationException) LinkMode(de.tudarmstadt.ukp.clarin.webanno.model.LinkMode) StringUtils(org.apache.commons.lang3.StringUtils) Type(org.apache.uima.cas.Type) Selection(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.Selection) AnnotationEditorExtensionRegistry(de.tudarmstadt.ukp.clarin.webanno.api.annotation.AnnotationEditorExtensionRegistry) Map(java.util.Map) AjaxRequestTarget(org.apache.wicket.ajax.AjaxRequestTarget) WebAnnoCasUtil.isSame(de.tudarmstadt.ukp.clarin.webanno.api.annotation.util.WebAnnoCasUtil.isSame) FeatureStructure(org.apache.uima.cas.FeatureStructure) IModel(org.apache.wicket.model.IModel) WebAnnoCasUtil.getSentenceNumber(de.tudarmstadt.ukp.clarin.webanno.api.annotation.util.WebAnnoCasUtil.getSentenceNumber) UIMAException(org.apache.uima.UIMAException) JCas(org.apache.uima.jcas.JCas) Tag(de.tudarmstadt.ukp.clarin.webanno.model.Tag) MultiValueMode(de.tudarmstadt.ukp.clarin.webanno.model.MultiValueMode) WebAnnoConst(de.tudarmstadt.ukp.clarin.webanno.api.WebAnnoConst) Set(java.util.Set) Component(org.apache.wicket.Component) ValuesGenerator(de.tudarmstadt.ukp.clarin.webanno.constraints.evaluator.ValuesGenerator) IFeedback(org.apache.wicket.feedback.IFeedback) Serializable(java.io.Serializable) ArcAdapter(de.tudarmstadt.ukp.clarin.webanno.api.annotation.adapter.ArcAdapter) Objects(java.util.Objects) List(java.util.List) TypeUtil(de.tudarmstadt.ukp.clarin.webanno.api.annotation.util.TypeUtil) AnnotationLayer(de.tudarmstadt.ukp.clarin.webanno.model.AnnotationLayer) ExceptionUtils(org.apache.commons.lang3.exception.ExceptionUtils) AnnotationFS(org.apache.uima.cas.text.AnnotationFS) ProjectService(de.tudarmstadt.ukp.clarin.webanno.api.ProjectService) SourceDocumentState(de.tudarmstadt.ukp.clarin.webanno.model.SourceDocumentState) AnnotatorState(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.AnnotatorState) WebAnnoCasUtil.selectByAddr(de.tudarmstadt.ukp.clarin.webanno.api.annotation.util.WebAnnoCasUtil.selectByAddr) CAS(org.apache.uima.cas.CAS) Feature(org.apache.uima.cas.Feature) Mode(de.tudarmstadt.ukp.clarin.webanno.model.Mode) PossibleValue(de.tudarmstadt.ukp.clarin.webanno.constraints.evaluator.PossibleValue) WebAnnoCasUtil.setFeature(de.tudarmstadt.ukp.clarin.webanno.api.annotation.util.WebAnnoCasUtil.setFeature) ArrayList(java.util.ArrayList) HashSet(java.util.HashSet) AnnotationSchemaService(de.tudarmstadt.ukp.clarin.webanno.api.AnnotationSchemaService) Project(de.tudarmstadt.ukp.clarin.webanno.model.Project) AjaxFormValidatingBehavior(org.apache.wicket.ajax.form.AjaxFormValidatingBehavior) LinkWithRoleModel(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.LinkWithRoleModel) WebAnnoCasUtil.getAddr(de.tudarmstadt.ukp.clarin.webanno.api.annotation.util.WebAnnoCasUtil.getAddr) DocumentService(de.tudarmstadt.ukp.clarin.webanno.api.DocumentService) FeatureState(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.FeatureState) Logger(org.slf4j.Logger) Iterator(java.util.Iterator) WebAnnoCasUtil.selectAt(de.tudarmstadt.ukp.clarin.webanno.api.annotation.util.WebAnnoCasUtil.selectAt) CurationDocumentService(de.tudarmstadt.ukp.clarin.webanno.curation.storage.CurationDocumentService) AnnotationActionHandler(de.tudarmstadt.ukp.clarin.webanno.api.annotation.action.AnnotationActionHandler) IOException(java.io.IOException) CasUtil(org.apache.uima.fit.util.CasUtil) Panel(org.apache.wicket.markup.html.panel.Panel) AnnotationFeature(de.tudarmstadt.ukp.clarin.webanno.model.AnnotationFeature) Evaluator(de.tudarmstadt.ukp.clarin.webanno.constraints.evaluator.Evaluator) ChainAdapter(de.tudarmstadt.ukp.clarin.webanno.api.annotation.adapter.ChainAdapter) VID(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.VID) RulesIndicator(de.tudarmstadt.ukp.clarin.webanno.constraints.evaluator.RulesIndicator) VID(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.VID) AnnotationFS(org.apache.uima.cas.text.AnnotationFS) Serializable(java.io.Serializable) Selection(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.Selection) AnnotatorState(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.AnnotatorState) AnnotationException(de.tudarmstadt.ukp.clarin.webanno.api.annotation.exception.AnnotationException) FeatureState(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.FeatureState)

Example 5 with Selection

use of de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.Selection in project webanno by webanno.

the class BratAnnotationEditor method actionSpan.

private SpanAnnotationResponse actionSpan(AjaxRequestTarget aTarget, IRequestParameters request, JCas jCas, VID paramId) throws IOException, AnnotationException {
    Offsets offsets = getOffsetsFromRequest(request, jCas, paramId);
    AnnotatorState state = getModelObject();
    Selection selection = state.getSelection();
    if (state.isSlotArmed()) {
        // When filling a slot, the current selection is *NOT* changed. The
        // Span annotation which owns the slot that is being filled remains
        // selected!
        getActionHandler().actionFillSlot(aTarget, jCas, offsets.getBegin(), offsets.getEnd(), paramId);
    } else {
        if (!paramId.isSynthetic()) {
            selection.selectSpan(paramId, jCas, offsets.getBegin(), offsets.getEnd());
            if (selection.getAnnotation().isNotSet()) {
                // Create new annotation
                getActionHandler().actionCreateOrUpdate(aTarget, jCas);
            } else {
                getActionHandler().actionSelect(aTarget, jCas);
            }
        }
    }
    return new SpanAnnotationResponse();
}
Also used : SpanAnnotationResponse(de.tudarmstadt.ukp.clarin.webanno.brat.message.SpanAnnotationResponse) Selection(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.Selection) AnnotatorState(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.AnnotatorState) Offsets(de.tudarmstadt.ukp.clarin.webanno.brat.render.model.Offsets)

Aggregations

AnnotatorState (de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.AnnotatorState)8 Selection (de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.Selection)8 AnnotationFS (org.apache.uima.cas.text.AnnotationFS)7 VID (de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.VID)4 AnnotationLayer (de.tudarmstadt.ukp.clarin.webanno.model.AnnotationLayer)4 AnnotationException (de.tudarmstadt.ukp.clarin.webanno.api.annotation.exception.AnnotationException)3 FeatureState (de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.FeatureState)3 IOException (java.io.IOException)3 AnnotationSchemaService (de.tudarmstadt.ukp.clarin.webanno.api.AnnotationSchemaService)2 DocumentService (de.tudarmstadt.ukp.clarin.webanno.api.DocumentService)2 ProjectService (de.tudarmstadt.ukp.clarin.webanno.api.ProjectService)2 WebAnnoConst (de.tudarmstadt.ukp.clarin.webanno.api.WebAnnoConst)2 AnnotationEditorExtensionRegistry (de.tudarmstadt.ukp.clarin.webanno.api.annotation.AnnotationEditorExtensionRegistry)2 AnnotationActionHandler (de.tudarmstadt.ukp.clarin.webanno.api.annotation.action.AnnotationActionHandler)2 ArcAdapter (de.tudarmstadt.ukp.clarin.webanno.api.annotation.adapter.ArcAdapter)2 ChainAdapter (de.tudarmstadt.ukp.clarin.webanno.api.annotation.adapter.ChainAdapter)2 SpanAdapter (de.tudarmstadt.ukp.clarin.webanno.api.annotation.adapter.SpanAdapter)2 TypeAdapter (de.tudarmstadt.ukp.clarin.webanno.api.annotation.adapter.TypeAdapter)2 LinkWithRoleModel (de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.LinkWithRoleModel)2 TypeUtil (de.tudarmstadt.ukp.clarin.webanno.api.annotation.util.TypeUtil)2