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Example 1 with VID

use of de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.VID in project webanno by webanno.

the class AnnotationDetailEditorPanel method createNewRelationAnnotation.

private void createNewRelationAnnotation(ArcAdapter aAdapter, JCas aJCas) throws AnnotationException {
    LOG.trace("createNewRelationAnnotation()");
    AnnotatorState state = getModelObject();
    Selection selection = state.getSelection();
    AnnotationFS originFs = selectByAddr(aJCas, selection.getOrigin());
    AnnotationFS targetFs = selectByAddr(aJCas, selection.getTarget());
    // Creating a relation
    AnnotationFS arc = aAdapter.add(originFs, targetFs, aJCas, state.getWindowBeginOffset(), state.getWindowEndOffset());
    selection.selectArc(new VID(arc), originFs, targetFs);
}
Also used : VID(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.VID) AnnotationFS(org.apache.uima.cas.text.AnnotationFS) Selection(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.Selection) AnnotatorState(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.AnnotatorState)

Example 2 with VID

use of de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.VID in project webanno by webanno.

the class AnnotationDetailEditorPanel method actionReverse.

@Override
public void actionReverse(AjaxRequestTarget aTarget) throws IOException, AnnotationException {
    aTarget.addChildren(getPage(), IFeedback.class);
    JCas jCas = getEditorCas();
    AnnotatorState state = getModelObject();
    AnnotationFS idFs = selectByAddr(jCas, state.getSelection().getAnnotation().getId());
    jCas.removeFsFromIndexes(idFs);
    AnnotationFS originFs = selectByAddr(jCas, state.getSelection().getOrigin());
    AnnotationFS targetFs = selectByAddr(jCas, state.getSelection().getTarget());
    List<FeatureState> featureStates = getModelObject().getFeatureStates();
    TypeAdapter adapter = annotationService.getAdapter(state.getSelectedAnnotationLayer());
    if (adapter instanceof ArcAdapter) {
        // If no features, still create arc #256
        AnnotationFS arc = ((ArcAdapter) adapter).add(targetFs, originFs, jCas, state.getWindowBeginOffset(), state.getWindowEndOffset());
        state.getSelection().setAnnotation(new VID(getAddr(arc)));
        for (FeatureState featureState : featureStates) {
            adapter.setFeatureValue(state, jCas, getAddr(arc), featureState.feature, featureState.value);
        }
    } else {
        error("chains cannot be reversed");
        return;
    }
    // persist changes
    writeEditorCas(jCas);
    int sentenceNumber = getSentenceNumber(jCas, originFs.getBegin());
    state.setFocusUnitIndex(sentenceNumber);
    state.getDocument().setSentenceAccessed(sentenceNumber);
    if (state.getPreferences().isScrollPage()) {
        autoScroll(jCas, false);
    }
    info("The arc has been reversed");
    state.rememberFeatures();
    // in case the user re-reverse it
    state.getSelection().reverseArc();
    onChange(aTarget);
}
Also used : VID(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.VID) AnnotationFS(org.apache.uima.cas.text.AnnotationFS) ArcAdapter(de.tudarmstadt.ukp.clarin.webanno.api.annotation.adapter.ArcAdapter) AnnotatorState(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.AnnotatorState) TypeAdapter(de.tudarmstadt.ukp.clarin.webanno.api.annotation.adapter.TypeAdapter) JCas(org.apache.uima.jcas.JCas) FeatureState(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.FeatureState)

Example 3 with VID

use of de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.VID in project webanno by webanno.

the class AnnotationDetailEditorPanel method createNewChainLinkAnnotation.

private void createNewChainLinkAnnotation(ChainAdapter aAdapter, JCas aJCas) {
    LOG.trace("createNewChainLinkAnnotation()");
    AnnotatorState state = getModelObject();
    Selection selection = state.getSelection();
    AnnotationFS originFs = selectByAddr(aJCas, selection.getOrigin());
    AnnotationFS targetFs = selectByAddr(aJCas, selection.getTarget());
    // Creating a new chain link
    int addr = aAdapter.addArc(aJCas, originFs, targetFs);
    selection.selectArc(new VID(addr), originFs, targetFs);
}
Also used : VID(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.VID) AnnotationFS(org.apache.uima.cas.text.AnnotationFS) Selection(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.Selection) AnnotatorState(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.AnnotatorState)

Example 4 with VID

use of de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.VID in project webanno by webanno.

the class AnnotationDetailEditorPanel method createNewChainElement.

private void createNewChainElement(ChainAdapter aAdapter, JCas aJCas) throws AnnotationException {
    LOG.trace("createNewChainElement()");
    AnnotatorState state = getModelObject();
    Selection selection = state.getSelection();
    List<FeatureState> featureStates = state.getFeatureStates();
    for (FeatureState featureState : featureStates) {
        Serializable spanValue = aAdapter.getSpan(aJCas, selection.getBegin(), selection.getEnd(), featureState.feature, null);
        if (spanValue != null) {
            // allow modification for forward annotation
            if (state.isForwardAnnotation()) {
                featureState.value = spanValue;
                featureStates.get(0).value = spanValue;
                String selectedTag = annotationFeatureForm.getBindTags().entrySet().stream().filter(e -> e.getValue().equals(spanValue)).map(Map.Entry::getKey).findFirst().orElse(null);
                annotationFeatureForm.setSelectedTag(selectedTag);
            }
        }
    }
    selection.setAnnotation(new VID(aAdapter.addSpan(aJCas, selection.getBegin(), selection.getEnd())));
    selection.setText(aJCas.getDocumentText().substring(selection.getBegin(), selection.getEnd()));
}
Also used : TypeAdapter(de.tudarmstadt.ukp.clarin.webanno.api.annotation.adapter.TypeAdapter) SpringBean(org.apache.wicket.spring.injection.annot.SpringBean) SpanAdapter(de.tudarmstadt.ukp.clarin.webanno.api.annotation.adapter.SpanAdapter) LoggerFactory(org.slf4j.LoggerFactory) NoResultException(javax.persistence.NoResultException) WebAnnoCasUtil(de.tudarmstadt.ukp.clarin.webanno.api.annotation.util.WebAnnoCasUtil) AnnotationException(de.tudarmstadt.ukp.clarin.webanno.api.annotation.exception.AnnotationException) LinkMode(de.tudarmstadt.ukp.clarin.webanno.model.LinkMode) StringUtils(org.apache.commons.lang3.StringUtils) Type(org.apache.uima.cas.Type) Selection(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.Selection) AnnotationEditorExtensionRegistry(de.tudarmstadt.ukp.clarin.webanno.api.annotation.AnnotationEditorExtensionRegistry) Map(java.util.Map) AjaxRequestTarget(org.apache.wicket.ajax.AjaxRequestTarget) WebAnnoCasUtil.isSame(de.tudarmstadt.ukp.clarin.webanno.api.annotation.util.WebAnnoCasUtil.isSame) FeatureStructure(org.apache.uima.cas.FeatureStructure) IModel(org.apache.wicket.model.IModel) WebAnnoCasUtil.getSentenceNumber(de.tudarmstadt.ukp.clarin.webanno.api.annotation.util.WebAnnoCasUtil.getSentenceNumber) UIMAException(org.apache.uima.UIMAException) JCas(org.apache.uima.jcas.JCas) Tag(de.tudarmstadt.ukp.clarin.webanno.model.Tag) MultiValueMode(de.tudarmstadt.ukp.clarin.webanno.model.MultiValueMode) WebAnnoConst(de.tudarmstadt.ukp.clarin.webanno.api.WebAnnoConst) Set(java.util.Set) Component(org.apache.wicket.Component) ValuesGenerator(de.tudarmstadt.ukp.clarin.webanno.constraints.evaluator.ValuesGenerator) IFeedback(org.apache.wicket.feedback.IFeedback) Serializable(java.io.Serializable) ArcAdapter(de.tudarmstadt.ukp.clarin.webanno.api.annotation.adapter.ArcAdapter) Objects(java.util.Objects) List(java.util.List) TypeUtil(de.tudarmstadt.ukp.clarin.webanno.api.annotation.util.TypeUtil) AnnotationLayer(de.tudarmstadt.ukp.clarin.webanno.model.AnnotationLayer) ExceptionUtils(org.apache.commons.lang3.exception.ExceptionUtils) AnnotationFS(org.apache.uima.cas.text.AnnotationFS) ProjectService(de.tudarmstadt.ukp.clarin.webanno.api.ProjectService) SourceDocumentState(de.tudarmstadt.ukp.clarin.webanno.model.SourceDocumentState) AnnotatorState(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.AnnotatorState) WebAnnoCasUtil.selectByAddr(de.tudarmstadt.ukp.clarin.webanno.api.annotation.util.WebAnnoCasUtil.selectByAddr) CAS(org.apache.uima.cas.CAS) Feature(org.apache.uima.cas.Feature) Mode(de.tudarmstadt.ukp.clarin.webanno.model.Mode) PossibleValue(de.tudarmstadt.ukp.clarin.webanno.constraints.evaluator.PossibleValue) WebAnnoCasUtil.setFeature(de.tudarmstadt.ukp.clarin.webanno.api.annotation.util.WebAnnoCasUtil.setFeature) ArrayList(java.util.ArrayList) HashSet(java.util.HashSet) AnnotationSchemaService(de.tudarmstadt.ukp.clarin.webanno.api.AnnotationSchemaService) Project(de.tudarmstadt.ukp.clarin.webanno.model.Project) AjaxFormValidatingBehavior(org.apache.wicket.ajax.form.AjaxFormValidatingBehavior) LinkWithRoleModel(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.LinkWithRoleModel) WebAnnoCasUtil.getAddr(de.tudarmstadt.ukp.clarin.webanno.api.annotation.util.WebAnnoCasUtil.getAddr) DocumentService(de.tudarmstadt.ukp.clarin.webanno.api.DocumentService) FeatureState(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.FeatureState) Logger(org.slf4j.Logger) Iterator(java.util.Iterator) WebAnnoCasUtil.selectAt(de.tudarmstadt.ukp.clarin.webanno.api.annotation.util.WebAnnoCasUtil.selectAt) CurationDocumentService(de.tudarmstadt.ukp.clarin.webanno.curation.storage.CurationDocumentService) AnnotationActionHandler(de.tudarmstadt.ukp.clarin.webanno.api.annotation.action.AnnotationActionHandler) IOException(java.io.IOException) CasUtil(org.apache.uima.fit.util.CasUtil) Panel(org.apache.wicket.markup.html.panel.Panel) AnnotationFeature(de.tudarmstadt.ukp.clarin.webanno.model.AnnotationFeature) Evaluator(de.tudarmstadt.ukp.clarin.webanno.constraints.evaluator.Evaluator) ChainAdapter(de.tudarmstadt.ukp.clarin.webanno.api.annotation.adapter.ChainAdapter) VID(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.VID) RulesIndicator(de.tudarmstadt.ukp.clarin.webanno.constraints.evaluator.RulesIndicator) VID(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.VID) Serializable(java.io.Serializable) Selection(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.Selection) AnnotatorState(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.AnnotatorState) FeatureState(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.FeatureState)

Example 5 with VID

use of de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.VID in project webanno by webanno.

the class AnnotationDetailEditorPanel method createNewSpanAnnotation.

private void createNewSpanAnnotation(AjaxRequestTarget aTarget, SpanAdapter aAdapter, JCas aJCas) throws IOException, AnnotationException {
    LOG.trace("createNewSpanAnnotation()");
    AnnotatorState state = getModelObject();
    Selection selection = state.getSelection();
    List<FeatureState> featureStates = state.getFeatureStates();
    if ((aAdapter.isAllowMultipleToken() || aAdapter.isLockToTokenOffsets()) && selection.getBegin() == selection.getEnd()) {
        throw new AnnotationException("Cannot create zero-width annotation on layers that lock to token boundaries.");
    }
    for (FeatureState featureState : featureStates) {
        Serializable spanValue = aAdapter.getSpan(aJCas, selection.getBegin(), selection.getEnd(), featureState.feature, null);
        if (spanValue != null) {
            // allow modification for forward annotation
            if (state.isForwardAnnotation()) {
                featureState.value = spanValue;
                featureStates.get(0).value = spanValue;
                String selectedTag = annotationFeatureForm.getBindTags().entrySet().stream().filter(e -> e.getValue().equals(spanValue)).map(Map.Entry::getKey).findFirst().orElse(null);
                annotationFeatureForm.setSelectedTag(selectedTag);
            } else {
                actionClear(aTarget);
                throw new AnnotationException("Cannot create another annotation of layer [" + state.getSelectedAnnotationLayer().getUiName() + "] at this" + " location - stacking is not enabled for this layer.");
            }
        }
    }
    int annoId = aAdapter.add(state, aJCas, selection.getBegin(), selection.getEnd());
    AnnotationFS annoFs = WebAnnoCasUtil.selectByAddr(aJCas, annoId);
    selection.selectSpan(new VID(annoId), aJCas, annoFs.getBegin(), annoFs.getEnd());
}
Also used : TypeAdapter(de.tudarmstadt.ukp.clarin.webanno.api.annotation.adapter.TypeAdapter) SpringBean(org.apache.wicket.spring.injection.annot.SpringBean) SpanAdapter(de.tudarmstadt.ukp.clarin.webanno.api.annotation.adapter.SpanAdapter) LoggerFactory(org.slf4j.LoggerFactory) NoResultException(javax.persistence.NoResultException) WebAnnoCasUtil(de.tudarmstadt.ukp.clarin.webanno.api.annotation.util.WebAnnoCasUtil) AnnotationException(de.tudarmstadt.ukp.clarin.webanno.api.annotation.exception.AnnotationException) LinkMode(de.tudarmstadt.ukp.clarin.webanno.model.LinkMode) StringUtils(org.apache.commons.lang3.StringUtils) Type(org.apache.uima.cas.Type) Selection(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.Selection) AnnotationEditorExtensionRegistry(de.tudarmstadt.ukp.clarin.webanno.api.annotation.AnnotationEditorExtensionRegistry) Map(java.util.Map) AjaxRequestTarget(org.apache.wicket.ajax.AjaxRequestTarget) WebAnnoCasUtil.isSame(de.tudarmstadt.ukp.clarin.webanno.api.annotation.util.WebAnnoCasUtil.isSame) FeatureStructure(org.apache.uima.cas.FeatureStructure) IModel(org.apache.wicket.model.IModel) WebAnnoCasUtil.getSentenceNumber(de.tudarmstadt.ukp.clarin.webanno.api.annotation.util.WebAnnoCasUtil.getSentenceNumber) UIMAException(org.apache.uima.UIMAException) JCas(org.apache.uima.jcas.JCas) Tag(de.tudarmstadt.ukp.clarin.webanno.model.Tag) MultiValueMode(de.tudarmstadt.ukp.clarin.webanno.model.MultiValueMode) WebAnnoConst(de.tudarmstadt.ukp.clarin.webanno.api.WebAnnoConst) Set(java.util.Set) Component(org.apache.wicket.Component) ValuesGenerator(de.tudarmstadt.ukp.clarin.webanno.constraints.evaluator.ValuesGenerator) IFeedback(org.apache.wicket.feedback.IFeedback) Serializable(java.io.Serializable) ArcAdapter(de.tudarmstadt.ukp.clarin.webanno.api.annotation.adapter.ArcAdapter) Objects(java.util.Objects) List(java.util.List) TypeUtil(de.tudarmstadt.ukp.clarin.webanno.api.annotation.util.TypeUtil) AnnotationLayer(de.tudarmstadt.ukp.clarin.webanno.model.AnnotationLayer) ExceptionUtils(org.apache.commons.lang3.exception.ExceptionUtils) AnnotationFS(org.apache.uima.cas.text.AnnotationFS) ProjectService(de.tudarmstadt.ukp.clarin.webanno.api.ProjectService) SourceDocumentState(de.tudarmstadt.ukp.clarin.webanno.model.SourceDocumentState) AnnotatorState(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.AnnotatorState) WebAnnoCasUtil.selectByAddr(de.tudarmstadt.ukp.clarin.webanno.api.annotation.util.WebAnnoCasUtil.selectByAddr) CAS(org.apache.uima.cas.CAS) Feature(org.apache.uima.cas.Feature) Mode(de.tudarmstadt.ukp.clarin.webanno.model.Mode) PossibleValue(de.tudarmstadt.ukp.clarin.webanno.constraints.evaluator.PossibleValue) WebAnnoCasUtil.setFeature(de.tudarmstadt.ukp.clarin.webanno.api.annotation.util.WebAnnoCasUtil.setFeature) ArrayList(java.util.ArrayList) HashSet(java.util.HashSet) AnnotationSchemaService(de.tudarmstadt.ukp.clarin.webanno.api.AnnotationSchemaService) Project(de.tudarmstadt.ukp.clarin.webanno.model.Project) AjaxFormValidatingBehavior(org.apache.wicket.ajax.form.AjaxFormValidatingBehavior) LinkWithRoleModel(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.LinkWithRoleModel) WebAnnoCasUtil.getAddr(de.tudarmstadt.ukp.clarin.webanno.api.annotation.util.WebAnnoCasUtil.getAddr) DocumentService(de.tudarmstadt.ukp.clarin.webanno.api.DocumentService) FeatureState(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.FeatureState) Logger(org.slf4j.Logger) Iterator(java.util.Iterator) WebAnnoCasUtil.selectAt(de.tudarmstadt.ukp.clarin.webanno.api.annotation.util.WebAnnoCasUtil.selectAt) CurationDocumentService(de.tudarmstadt.ukp.clarin.webanno.curation.storage.CurationDocumentService) AnnotationActionHandler(de.tudarmstadt.ukp.clarin.webanno.api.annotation.action.AnnotationActionHandler) IOException(java.io.IOException) CasUtil(org.apache.uima.fit.util.CasUtil) Panel(org.apache.wicket.markup.html.panel.Panel) AnnotationFeature(de.tudarmstadt.ukp.clarin.webanno.model.AnnotationFeature) Evaluator(de.tudarmstadt.ukp.clarin.webanno.constraints.evaluator.Evaluator) ChainAdapter(de.tudarmstadt.ukp.clarin.webanno.api.annotation.adapter.ChainAdapter) VID(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.VID) RulesIndicator(de.tudarmstadt.ukp.clarin.webanno.constraints.evaluator.RulesIndicator) VID(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.VID) AnnotationFS(org.apache.uima.cas.text.AnnotationFS) Serializable(java.io.Serializable) Selection(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.Selection) AnnotatorState(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.AnnotatorState) AnnotationException(de.tudarmstadt.ukp.clarin.webanno.api.annotation.exception.AnnotationException) FeatureState(de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.FeatureState)

Aggregations

VID (de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.VID)11 AnnotationFS (org.apache.uima.cas.text.AnnotationFS)8 AnnotatorState (de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.AnnotatorState)7 AnnotationFeature (de.tudarmstadt.ukp.clarin.webanno.model.AnnotationFeature)6 FeatureStructure (org.apache.uima.cas.FeatureStructure)5 JCas (org.apache.uima.jcas.JCas)5 TypeAdapter (de.tudarmstadt.ukp.clarin.webanno.api.annotation.adapter.TypeAdapter)4 Selection (de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.Selection)4 TypeUtil (de.tudarmstadt.ukp.clarin.webanno.api.annotation.util.TypeUtil)4 WebAnnoConst (de.tudarmstadt.ukp.clarin.webanno.api.WebAnnoConst)3 ArcAdapter (de.tudarmstadt.ukp.clarin.webanno.api.annotation.adapter.ArcAdapter)3 ChainAdapter (de.tudarmstadt.ukp.clarin.webanno.api.annotation.adapter.ChainAdapter)3 SpanAdapter (de.tudarmstadt.ukp.clarin.webanno.api.annotation.adapter.SpanAdapter)3 FeatureState (de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.FeatureState)3 LinkWithRoleModel (de.tudarmstadt.ukp.clarin.webanno.api.annotation.model.LinkWithRoleModel)3 WebAnnoCasUtil.selectByAddr (de.tudarmstadt.ukp.clarin.webanno.api.annotation.util.WebAnnoCasUtil.selectByAddr)3 AnnotationLayer (de.tudarmstadt.ukp.clarin.webanno.model.AnnotationLayer)3 LinkMode (de.tudarmstadt.ukp.clarin.webanno.model.LinkMode)3 MultiValueMode (de.tudarmstadt.ukp.clarin.webanno.model.MultiValueMode)3 Type (org.apache.uima.cas.Type)3