Examples with BMPriorLikelihood dr.evomodel.coalescent.BMPriorLikelihood used on opensource projects

Example 1 with BMPriorLikelihood

use of dr.evomodel.coalescent.BMPriorLikelihood in project beast-mcmc by beast-dev.

the class BMPriorLikelihoodParser method parseXMLObject.

public Object parseXMLObject(XMLObject xo) throws XMLParseException {
    // Parameter mean = getParam(xo, MEAN);
    Parameter sigma = getParam(xo, SIGMA);
    //  Parameter lambda = getParam(xo, LAMBDA);
    final boolean logSpace = xo.getAttribute(LOG_SPACE, false);
    //   final boolean normalize = xo.getAttribute(NORMALIZE, false);
    VariableDemographicModel m = (VariableDemographicModel) xo.getChild(VariableDemographicModel.class);
    ParametricDistributionModel popMeanPrior = (ParametricDistributionModel) xo.getChild(ParametricDistributionModel.class);
    return new BMPriorLikelihood(sigma, m, logSpace, popMeanPrior);
}