Examples with EmpiricalPiecewiseModel dr.evomodel.coalescent.EmpiricalPiecewiseModel used on opensource projects

Example 1 with EmpiricalPiecewiseModel

use of dr.evomodel.coalescent.EmpiricalPiecewiseModel in project beast-mcmc by beast-dev.

the class EmpiricalPiecewiseModelParser method parseXMLObject.

public Object parseXMLObject(XMLObject xo) throws XMLParseException {
    Units.Type units = XMLUnits.Utils.getUnitsAttr(xo);
    XMLObject cxo = xo.getChild(INTERVAL_WIDTHS);
    double[] intervalWidths = cxo.getDoubleArrayAttribute("values");
    cxo = xo.getChild(POPULATION_SIZES);
    Parameter popSizes = (Parameter) cxo.getChild(Parameter.class);
    cxo = xo.getChild(TAU);
    Parameter scaleParam = (Parameter) cxo.getChild(Parameter.class);
    cxo = xo.getChild(THRESHOLD);
    Parameter bParam = (Parameter) cxo.getChild(Parameter.class);
    cxo = xo.getChild(LAG);
    Parameter offsetParam = (Parameter) cxo.getChild(Parameter.class);
    return new EmpiricalPiecewiseModel(intervalWidths, popSizes, scaleParam, bParam, offsetParam, units);
}