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Example 1 with ExponentialConstantModel

use of dr.evomodel.coalescent.ExponentialConstantModel in project beast-mcmc by beast-dev.

the class ExponentialConstantModelParser method parseXMLObject.

public Object parseXMLObject(XMLObject xo) throws XMLParseException {
    Units.Type units = XMLUnits.Utils.getUnitsAttr(xo);
    XMLObject cxo = xo.getChild(POPULATION_SIZE);
    Parameter N0Param = (Parameter) cxo.getChild(Parameter.class);
    cxo = xo.getChild(GROWTH_RATE);
    Parameter logGrowthParam = (Parameter) cxo.getChild(Parameter.class);
    cxo = xo.getChild(TRANSITION_TIME);
    Parameter timeParam = (Parameter) cxo.getChild(Parameter.class);
    return new ExponentialConstantModel(N0Param, logGrowthParam, timeParam, units);
}
Also used : Parameter(dr.inference.model.Parameter) ExponentialConstantModel(dr.evomodel.coalescent.ExponentialConstantModel) Units(dr.evolution.util.Units) XMLUnits(dr.evoxml.util.XMLUnits)

Aggregations

Units (dr.evolution.util.Units)1 ExponentialConstantModel (dr.evomodel.coalescent.ExponentialConstantModel)1 XMLUnits (dr.evoxml.util.XMLUnits)1 Parameter (dr.inference.model.Parameter)1