Examples with ExponentialLogisticModel dr.evomodel.coalescent.ExponentialLogisticModel used on opensource projects

Example 1 with ExponentialLogisticModel

use of dr.evomodel.coalescent.ExponentialLogisticModel in project beast-mcmc by beast-dev.

the class ExponentialLogisticModelParser method parseXMLObject.

public Object parseXMLObject(XMLObject xo) throws XMLParseException {
    Units.Type units = XMLUnits.Utils.getUnitsAttr(xo);
    XMLObject cxo = xo.getChild(POPULATION_SIZE);
    Parameter N0Param = (Parameter) cxo.getChild(Parameter.class);
    cxo = xo.getChild(LOGISTIC_GROWTH_RATE);
    Parameter logGrowthParam = (Parameter) cxo.getChild(Parameter.class);
    cxo = xo.getChild(LOGISTIC_SHAPE);
    Parameter shapeParam = (Parameter) cxo.getChild(Parameter.class);
    cxo = xo.getChild(EXPONENTIAL_GROWTH_RATE);
    Parameter expGrowthParam = (Parameter) cxo.getChild(Parameter.class);
    cxo = xo.getChild(TRANSITION_TIME);
    Parameter timeParam = (Parameter) cxo.getChild(Parameter.class);
    double alpha = xo.getDoubleAttribute(ALPHA);
    return new ExponentialLogisticModel(N0Param, logGrowthParam, shapeParam, expGrowthParam, timeParam, alpha, units);
}