Examples with RestrictedPartials dr.evomodel.continuous.RestrictedPartials used on opensource projects

Example 1 with RestrictedPartials

use of dr.evomodel.continuous.RestrictedPartials in project beast-mcmc by beast-dev.

the class RestrictedPartialsParser method parseXMLObject.

public Object parseXMLObject(XMLObject xo) throws XMLParseException {
    String name = xo.getId();
    TreeModel tree = (TreeModel) xo.getChild(TreeModel.class);
    TaxonList taxa = MonophylyStatisticParser.parseTaxonListOrTaxa(xo.getChild(MonophylyStatisticParser.MRCA));
    Parameter meanParameter = (Parameter) xo.getElementFirstChild(MultivariateDistributionLikelihood.MVN_MEAN);
    Parameter priorSampleSize = (Parameter) xo.getElementFirstChild(AbstractMultivariateTraitLikelihood.PRIOR_SAMPLE_SIZE);
    RestrictedPartials rp = null;
    try {
        rp = new RestrictedPartials(name, tree, taxa, meanParameter, priorSampleSize);
    } catch (TreeUtils.MissingTaxonException e) {
        throw new XMLParseException("Unable to find taxa for " + xo.getId());
    }
    return rp;
}