Examples with SpeciesTreeSimplePrior dr.evomodel.speciation.SpeciesTreeSimplePrior used on opensource projects

Example 1 with SpeciesTreeSimplePrior

use of dr.evomodel.speciation.SpeciesTreeSimplePrior in project beast-mcmc by beast-dev.

the class SpeciesTreeSimplePriorParser method parseXMLObject.

public Object parseXMLObject(XMLObject xo) throws XMLParseException {
    SpeciesTreeModel st = (SpeciesTreeModel) xo.getChild(SpeciesTreeModel.class);
    //ParametricDistributionModel pr = (ParametricDistributionModel) xo.getChild(ParametricDistributionModel.class);
    Parameter pr = (Parameter) ((XMLObject) xo.getChild("sigma")).getChild(Parameter.class);
    final XMLObject cxo = xo.getChild(TIPS);
    final ParametricDistributionModel tipsPrior = (ParametricDistributionModel) cxo.getChild(ParametricDistributionModel.class);
    return new SpeciesTreeSimplePrior(st, pr, tipsPrior);
}