Examples with DefaultTreeModel dr.evomodel.tree.DefaultTreeModel used on opensource projects

Example 46 with DefaultTreeModel

use of dr.evomodel.tree.DefaultTreeModel in project beast-mcmc by beast-dev.

the class RLYModelTest method testTreeBitRandomWalk.

public void testTreeBitRandomWalk() {
    DefaultTreeModel treeModel = new DefaultTreeModel("treeModel", tree);
    Parameter I = treeModel.createNodeTraitsParameter(birthRateIndicator, new double[] { 1 });
    Parameter b = treeModel.createNodeTraitsParameter(birthRate, new double[] { 1 });
    OperatorSchedule schedule = new SimpleOperatorSchedule();
    TreeBitRandomWalkOperator tbrw = new TreeBitRandomWalkOperator(treeModel, birthRateIndicator, birthRate, 1.0, 4, true);
    BitFlipOperator bfo = new BitFlipOperator(I, 1.0, true);
    schedule.addOperator(tbrw);
    schedule.addOperator(bfo);
    randomLocalYuleTester(treeModel, I, b, schedule);
}