Examples with MicrosatelliteSamplerTreeModel dr.evomodel.tree.MicrosatelliteSamplerTreeModel used on opensource projects

Example 6 with MicrosatelliteSamplerTreeModel

use of dr.evomodel.tree.MicrosatelliteSamplerTreeModel in project beast-mcmc by beast-dev.

the class MicrosatelliteSingleAncestralStateGibbsOperatorParser method parseXMLObject.

public Object parseXMLObject(XMLObject xo) throws XMLParseException {
    final double weight = xo.getDoubleAttribute(MCMCOperator.WEIGHT);
    final Parameter parameter = (Parameter) xo.getChild(Parameter.class);
    final MicrosatelliteSamplerTreeModel msatSamplerTreeModel = (MicrosatelliteSamplerTreeModel) xo.getChild(MicrosatelliteSamplerTreeModel.class);
    final MicrosatelliteModel msatModel = (MicrosatelliteModel) xo.getChild(MicrosatelliteModel.class);
    final BranchRateModel branchRateModel = (BranchRateModel) xo.getChild(BranchRateModel.class);
    return new MicrosatelliteSingleAncestralStateGibbsOperator(parameter, msatSamplerTreeModel, msatModel, branchRateModel, weight);
}