Examples with DatasetVersionUser edu.harvard.iq.dataverse.DatasetVersionUser used on opensource projects

Example 1 with DatasetVersionUser

use of edu.harvard.iq.dataverse.DatasetVersionUser in project dataverse by IQSS.

the class ReturnDatasetToAuthorCommandTest method setUp.

@Before
public void setUp() {
    dataset = new Dataset();
    HttpServletRequest aHttpServletRequest = null;
    dataverseRequest = new DataverseRequest(MocksFactory.makeAuthenticatedUser("First", "Last"), aHttpServletRequest);
    testEngine = new TestDataverseEngine(new TestCommandContext() {

        @Override
        public AuthenticationServiceBean authentication() {
            return new AuthenticationServiceBean() {

                @Override
                public AuthenticatedUser getAuthenticatedUser(String id) {
                    return MocksFactory.makeAuthenticatedUser("First", "Last");
                }
            };
        }

        @Override
        public IndexServiceBean index() {
            return new IndexServiceBean() {

                @Override
                public Future<String> indexDataset(Dataset dataset, boolean doNormalSolrDocCleanUp) {
                    return null;
                }
            };
        }

        @Override
        public EntityManager em() {
            return new NoOpTestEntityManager();
        }

        @Override
        public DatasetServiceBean datasets() {
            return new DatasetServiceBean() {

                {
                    em = new NoOpTestEntityManager();
                }

                @Override
                public DatasetVersionUser getDatasetVersionUser(DatasetVersion version, User user) {
                    return null;
                }

                @Override
                public WorkflowComment addWorkflowComment(WorkflowComment comment) {
                    return comment;
                }

                @Override
                public void removeDatasetLocks(Long datasetId, DatasetLock.Reason aReason) {
                }
            };
        }

        @Override
        public DataverseRoleServiceBean roles() {
            return new DataverseRoleServiceBean() {

                @Override
                public DataverseRole findBuiltinRoleByAlias(String alias) {
                    return new DataverseRole();
                }

                @Override
                public RoleAssignment save(RoleAssignment assignment) {
                    // no-op
                    return assignment;
                }
            };
        }

        @Override
        public PermissionServiceBean permissions() {
            return new PermissionServiceBean() {

                @Override
                public List<AuthenticatedUser> getUsersWithPermissionOn(Permission permission, DvObject dvo) {
                    // We only need permissions for notifications, which we are testing in InReviewWorkflowIT.
                    return Collections.emptyList();
                }
            };
        }
    });
}

Example 2 with DatasetVersionUser

use of edu.harvard.iq.dataverse.DatasetVersionUser in project dataverse by IQSS.

the class SubmitDatasetForReviewCommand method save.

public Dataset save(CommandContext ctxt) throws CommandException {
    Timestamp updateTime = new Timestamp(new Date().getTime());
    theDataset.getEditVersion().setLastUpdateTime(updateTime);
    theDataset.setModificationTime(updateTime);
    Dataset savedDataset = ctxt.em().merge(theDataset);
    ctxt.em().flush();
    DatasetVersionUser ddu = ctxt.datasets().getDatasetVersionUser(theDataset.getLatestVersion(), this.getUser());
    if (ddu != null) {
        ddu.setLastUpdateDate(updateTime);
        ctxt.em().merge(ddu);
    } else {
        // TODO: This logic to update the DatasetVersionUser was copied from UpdateDatasetCommand and also appears in CreateDatasetCommand, PublishDatasetCommand UpdateDatasetCommand, and ReturnDatasetToAuthorCommand. Consider consolidating.
        DatasetVersionUser datasetDataverseUser = new DatasetVersionUser();
        datasetDataverseUser.setDatasetVersion(savedDataset.getLatestVersion());
        datasetDataverseUser.setLastUpdateDate((Timestamp) updateTime);
        String id = getUser().getIdentifier();
        id = id.startsWith("@") ? id.substring(1) : id;
        AuthenticatedUser au = ctxt.authentication().getAuthenticatedUser(id);
        datasetDataverseUser.setAuthenticatedUser(au);
        ctxt.em().merge(datasetDataverseUser);
    }
    List<AuthenticatedUser> authUsers = ctxt.permissions().getUsersWithPermissionOn(Permission.PublishDataset, savedDataset);
    for (AuthenticatedUser au : authUsers) {
        ctxt.notifications().sendNotification(au, new Timestamp(new Date().getTime()), UserNotification.Type.SUBMITTEDDS, savedDataset.getLatestVersion().getId());
    }
    // TODO: What should we do with the indexing result? Print it to the log?
    boolean doNormalSolrDocCleanUp = true;
    Future<String> indexingResult = ctxt.index().indexDataset(savedDataset, doNormalSolrDocCleanUp);
    return savedDataset;
}

Example 3 with DatasetVersionUser

use of edu.harvard.iq.dataverse.DatasetVersionUser in project dataverse by IQSS.

the class ReturnDatasetToAuthorCommand method save.

public Dataset save(CommandContext ctxt) throws CommandException {
    Timestamp updateTime = new Timestamp(new Date().getTime());
    theDataset.getEditVersion().setLastUpdateTime(updateTime);
    // We set "in review" to false because now the ball is back in the author's court.
    theDataset.setModificationTime(updateTime);
    // TODO: ctxt.datasets().removeDatasetLocks() doesn't work. Try RemoveLockCommand?
    AuthenticatedUser authenticatedUser = null;
    for (DatasetLock lock : theDataset.getLocks()) {
        if (DatasetLock.Reason.InReview.equals(lock.getReason())) {
            theDataset.removeLock(lock);
            // TODO: Are we supposed to remove the dataset lock from the user? What's going on here?
            authenticatedUser = lock.getUser();
        }
    }
    Dataset savedDataset = ctxt.em().merge(theDataset);
    ctxt.em().flush();
    DatasetVersionUser ddu = ctxt.datasets().getDatasetVersionUser(theDataset.getLatestVersion(), this.getUser());
    WorkflowComment workflowComment = new WorkflowComment(theDataset.getEditVersion(), WorkflowComment.Type.RETURN_TO_AUTHOR, comment, (AuthenticatedUser) this.getUser());
    ctxt.datasets().addWorkflowComment(workflowComment);
    if (ddu != null) {
        ddu.setLastUpdateDate(updateTime);
        ctxt.em().merge(ddu);
    } else {
        // TODO: This logic to update the DatasetVersionUser was copied from UpdateDatasetCommand and also appears in CreateDatasetCommand, PublishDatasetCommand UpdateDatasetCommand, and SubmitDatasetForReviewCommand. Consider consolidating.
        DatasetVersionUser datasetDataverseUser = new DatasetVersionUser();
        datasetDataverseUser.setDatasetVersion(savedDataset.getLatestVersion());
        datasetDataverseUser.setLastUpdateDate(updateTime);
        String id = getUser().getIdentifier();
        id = id.startsWith("@") ? id.substring(1) : id;
        AuthenticatedUser au = ctxt.authentication().getAuthenticatedUser(id);
        datasetDataverseUser.setAuthenticatedUser(au);
        ctxt.em().merge(datasetDataverseUser);
    }
    /*
            So what we're doing here is sending notifications to the authors who do not have publish permissions
            First get users who can publish - or in this case review
            Then get authors.
            Then remove reviewers from the autors list
            Finally send a notification to the remaining (non-reviewing) authors - Hey! your dataset was rejected.
        */
    List<AuthenticatedUser> reviewers = ctxt.permissions().getUsersWithPermissionOn(Permission.PublishDataset, savedDataset);
    List<AuthenticatedUser> authors = ctxt.permissions().getUsersWithPermissionOn(Permission.EditDataset, savedDataset);
    for (AuthenticatedUser au : reviewers) {
        authors.remove(au);
    }
    for (AuthenticatedUser au : authors) {
        ctxt.notifications().sendNotification(au, new Timestamp(new Date().getTime()), UserNotification.Type.RETURNEDDS, savedDataset.getLatestVersion().getId(), comment);
    }
    // TODO: What should we do with the indexing result? Print it to the log?
    boolean doNormalSolrDocCleanUp = true;
    Future<String> indexingResult = ctxt.index().indexDataset(savedDataset, doNormalSolrDocCleanUp);
    return savedDataset;
}

Example 4 with DatasetVersionUser

use of edu.harvard.iq.dataverse.DatasetVersionUser in project dataverse by IQSS.

the class SubmitDatasetForReviewCommandTest method setUp.

@Before
public void setUp() {
    dataset = new Dataset();
    HttpServletRequest aHttpServletRequest = null;
    dataverseRequest = new DataverseRequest(MocksFactory.makeAuthenticatedUser("First", "Last"), aHttpServletRequest);
    testEngine = new TestDataverseEngine(new TestCommandContext() {

        @Override
        public AuthenticationServiceBean authentication() {
            return new AuthenticationServiceBean() {

                @Override
                public AuthenticatedUser getAuthenticatedUser(String id) {
                    return MocksFactory.makeAuthenticatedUser("First", "Last");
                }
            };
        }

        @Override
        public IndexServiceBean index() {
            return new IndexServiceBean() {

                @Override
                public Future<String> indexDataset(Dataset dataset, boolean doNormalSolrDocCleanUp) {
                    return null;
                }
            };
        }

        @Override
        public EntityManager em() {
            return new TestEntityManager() {

                @Override
                public <T> T merge(T entity) {
                    return entity;
                }

                @Override
                public void flush() {
                // nothing to do here
                }
            };
        }

        @Override
        public DatasetServiceBean datasets() {
            return new DatasetServiceBean() {

                {
                    em = new NoOpTestEntityManager();
                }

                @Override
                public DatasetVersionUser getDatasetVersionUser(DatasetVersion version, User user) {
                    return null;
                }

                @Override
                public DatasetLock addDatasetLock(Long datasetId, DatasetLock.Reason reason, Long userId, String info) {
                    return null;
                }
            };
        }

        @Override
        public DataverseRoleServiceBean roles() {
            return new DataverseRoleServiceBean() {

                @Override
                public DataverseRole findBuiltinRoleByAlias(String alias) {
                    return new DataverseRole();
                }

                @Override
                public RoleAssignment save(RoleAssignment assignment) {
                    // no-op
                    return assignment;
                }
            };
        }

        @Override
        public PermissionServiceBean permissions() {
            return new PermissionServiceBean() {

                @Override
                public List<AuthenticatedUser> getUsersWithPermissionOn(Permission permission, DvObject dvo) {
                    // We only need permissions for notifications, which we are testing in InReviewWorkflowIT.
                    return Collections.emptyList();
                }
            };
        }
    });
}

Example 5 with DatasetVersionUser

use of edu.harvard.iq.dataverse.DatasetVersionUser in project dataverse by IQSS.

the class FinalizeDatasetPublicationCommand method execute.

@Override
public Dataset execute(CommandContext ctxt) throws CommandException {
    registerExternalIdentifier(theDataset, ctxt);
    if (theDataset.getPublicationDate() == null) {
        theDataset.setReleaseUser((AuthenticatedUser) getUser());
        theDataset.setPublicationDate(new Timestamp(new Date().getTime()));
    }
    // update metadata
    Timestamp updateTime = new Timestamp(new Date().getTime());
    theDataset.getEditVersion().setReleaseTime(updateTime);
    theDataset.getEditVersion().setLastUpdateTime(updateTime);
    theDataset.setModificationTime(updateTime);
    theDataset.setFileAccessRequest(theDataset.getLatestVersion().getTermsOfUseAndAccess().isFileAccessRequest());
    updateFiles(updateTime, ctxt);
    // 
    // TODO: Not sure if this .merge() is necessary here - ?
    // I'm moving a bunch of code from PublishDatasetCommand here; and this .merge()
    // comes from there. There's a chance that the final merge, at the end of this
    // command, would be sufficient. -- L.A. Sep. 6 2017
    theDataset = ctxt.em().merge(theDataset);
    DatasetVersionUser ddu = ctxt.datasets().getDatasetVersionUser(theDataset.getLatestVersion(), getUser());
    if (ddu == null) {
        ddu = new DatasetVersionUser();
        ddu.setDatasetVersion(theDataset.getLatestVersion());
        String id = getUser().getIdentifier();
        id = id.startsWith("@") ? id.substring(1) : id;
        AuthenticatedUser au = ctxt.authentication().getAuthenticatedUser(id);
        ddu.setAuthenticatedUser(au);
    }
    ddu.setLastUpdateDate((Timestamp) updateTime);
    ctxt.em().merge(ddu);
    updateParentDataversesSubjectsField(theDataset, ctxt);
    publicizeExternalIdentifier(theDataset, ctxt);
    PrivateUrl privateUrl = ctxt.engine().submit(new GetPrivateUrlCommand(getRequest(), theDataset));
    if (privateUrl != null) {
        ctxt.engine().submit(new DeletePrivateUrlCommand(getRequest(), theDataset));
    }
    theDataset.getEditVersion().setVersionState(DatasetVersion.VersionState.RELEASED);
    exportMetadata(ctxt.settings());
    boolean doNormalSolrDocCleanUp = true;
    ctxt.index().indexDataset(theDataset, doNormalSolrDocCleanUp);
    ctxt.solrIndex().indexPermissionsForOneDvObject(theDataset);
    // Remove locks
    ctxt.engine().submit(new RemoveLockCommand(getRequest(), theDataset, DatasetLock.Reason.Workflow));
    if (theDataset.isLockedFor(DatasetLock.Reason.InReview)) {
        ctxt.engine().submit(new RemoveLockCommand(getRequest(), theDataset, DatasetLock.Reason.InReview));
    }
    ctxt.workflows().getDefaultWorkflow(TriggerType.PostPublishDataset).ifPresent(wf -> {
        try {
            ctxt.workflows().start(wf, buildContext(doiProvider, TriggerType.PostPublishDataset));
        } catch (CommandException ex) {
            logger.log(Level.SEVERE, "Error invoking post-publish workflow: " + ex.getMessage(), ex);
        }
    });
    Dataset resultSet = ctxt.em().merge(theDataset);
    if (resultSet != null) {
        notifyUsersDatasetPublish(ctxt, theDataset);
    }
    return resultSet;
}