Examples with OWLEntityData edu.stanford.bmir.protege.web.shared.entity.OWLEntityData used on opensource projects

Example 6 with OWLEntityData

use of edu.stanford.bmir.protege.web.shared.entity.OWLEntityData in project webprotege by protegeproject.

the class EntitySearcher method toSearchResult.

private EntitySearchResult toSearchResult(Pattern searchPattern, SearchMatch ren) {
    OWLEntityData ed = ren.getEntityData();
    String rendering = ed.getBrowserText();
    StringBuilder highlighted = new StringBuilder();
    highlightSearchResult(searchPattern, rendering, highlighted);
    if (ren.getMatchType() == MatchType.IRI) {
        // Matched the IRI remainder
        highlighted.append("<div class=\"searchedIri\">");
        IRI iri = ed.getEntity().getIRI();
        highlightSearchResult(searchPattern, iri.toString(), highlighted);
        highlighted.append("</div>");
    }
    if (ren.getMatchType() == MatchType.TAG) {
        for (Tag tag : tagsByEntity.get(ed.getEntity())) {
            if (searchString.equalsIgnoreCase(tag.getLabel())) {
                highlighted.append("<div class='wp-tag wp-tag--inline-tag' style='display: inline-block; color: ").append(tag.getColor().getHex()).append("; background-color:").append(tag.getBackgroundColor().getHex()).append(";'>");
                highlighted.append(tag.getLabel());
                highlighted.append("</div>");
            }
        }
    }
    return new EntitySearchResult(ed, displayName(), highlighted.toString());
}

Example 7 with OWLEntityData

use of edu.stanford.bmir.protege.web.shared.entity.OWLEntityData in project webprotege by protegeproject.

the class EntitySearcher method performMatch.

@Nullable
private SearchMatch performMatch(@Nonnull OWLEntity e) {
    OWLEntityData rendering = renderingSupplier.getRendering(e);
    MatchType matchType = null;
    if (tagsByLabel.containsKey(searchString)) {
        for (Tag tag : tagsByEntity.get(e)) {
            if (tag.getLabel().equals(searchString)) {
                matchType = MatchType.TAG;
                break;
            }
        }
    }
    if (matchType == null) {
        matchType = MatchType.RENDERING;
        // All search words must be found
        for (String searchWord : searchWords) {
            if (!StringUtils.containsIgnoreCase(rendering.getBrowserText(), searchWord)) {
                matchType = null;
                break;
            }
        }
    }
    // If we didn't match the rendering then search the IRI remainder
    IRI entityIri = rendering.getEntity().getIRI();
    if (matchType == null && entityIri.toString().startsWith(Obo2OWLConstants.DEFAULT_IRI_PREFIX)) {
        matchType = MatchType.IRI;
        Optional<String> remainder = entityIri.getRemainder();
        if (remainder.isPresent()) {
            for (String searchWord : searchWords) {
                if (!StringUtils.containsIgnoreCase(remainder.get(), searchWord)) {
                    matchType = null;
                    break;
                }
            }
        }
    }
    if (matchType != null) {
        return new SearchMatch(searchWords, rendering, matchType);
    } else {
        return null;
    }
}

Example 8 with OWLEntityData

use of edu.stanford.bmir.protege.web.shared.entity.OWLEntityData in project webprotege by protegeproject.

the class WatchTriggeredHandlerImpl method handleWatchTriggered.

@Override
public void handleWatchTriggered(@Nonnull Set<UserId> usersToNotify, @Nonnull OWLEntity modifiedEntity, @Nonnull UserId byUser) {
    List<String> emailAddresses = usersToNotify.stream().filter(u -> accessManager.hasPermission(forUser(u), forProject(projectId), VIEW_PROJECT)).map(userDetailsManager::getEmail).filter(Optional::isPresent).map(Optional::get).distinct().collect(toList());
    OWLEntityData modifiedEntityData = renderingManager.getRendering(modifiedEntity);
    Map<String, Object> templateObjects = TemplateObjectsBuilder.builder().withUserId(byUser).withEntity(modifiedEntityData).withProjectDetails(projectDetailsManager.getProjectDetails(projectId)).withApplicationName(applicationNameSupplier.get()).withProjectUrl(placeUrl.getProjectUrl(projectId)).build();
    String displayName = projectDetailsManager.getProjectDetails(projectId).getDisplayName();
    String emailSubject = String.format("[%s] Changes made to %s in %s by %s", displayName, modifiedEntityData.getBrowserText(), displayName, userDetailsManager.getUserDetails(byUser).map(d -> "by " + d.getDisplayName()).orElse(""));
    String emailBody = templateEngine.populateTemplate(watchTemplate.getContents(), templateObjects);
    logger.info("{} Watch triggered by {} on {}.  Notifying {}", projectId, byUser, modifiedEntity, usersToNotify);
    sendMail.sendMail(emailAddresses, emailSubject, emailBody, MessageHeader.inReplyTo(projectId.getId()), MessageHeader.references(projectId.getId()));
}

Example 9 with OWLEntityData

use of edu.stanford.bmir.protege.web.shared.entity.OWLEntityData in project webprotege by protegeproject.

the class ChangeEntityIRIActionHandler method execute.

@Nonnull
@Override
public ChangeEntityIRIResult execute(@Nonnull ChangeEntityIRIAction action, @Nonnull ExecutionContext executionContext) {
    OWLEntityRenamer renamer = new OWLEntityRenamer(rootOntology.getOWLOntologyManager(), rootOntology.getImportsClosure());
    List<OWLOntologyChange> changeList = renamer.changeIRI(action.getEntity(), action.getTheNewIri());
    OWLEntityData oldRendering = renderer.getRendering(action.getEntity());
    applyChanges.applyChanges(executionContext.getUserId(), new FixedChangeListGenerator<>(changeList, action.getEntity(), String.format("Changed %s IRI from %s to %s", action.getEntity().getEntityType().getPrintName(), action.getEntity().getIRI(), action.getTheNewIri())));
    OWLEntity theNewEntity = dataFactory.getOWLEntity(action.getEntity().getEntityType(), action.getTheNewIri());
    discussionThreadRepository.replaceEntity(projectId, action.getEntity(), theNewEntity);
    OWLEntityData newRendering = renderer.getRendering(theNewEntity);
    return new ChangeEntityIRIResult(projectId, oldRendering, newRendering);
}

Example 10 with OWLEntityData

use of edu.stanford.bmir.protege.web.shared.entity.OWLEntityData in project webprotege by protegeproject.

the class DeprecatedEntitiesPresenter method refillView.

private void refillView() {
    view.setEntities(Collections.emptyList());
    int pageNumber = view.getPageNumber();
    dispatchServiceManager.execute(new GetDeprecatedEntitiesAction(getProjectId(), PageRequest.requestPageWithSize(pageNumber, PAGE_SIZE), Sets.newHashSet(EntityType.values())), this, result -> {
        Page<OWLEntityData> page = result.getDeprecatedEntities();
        view.setEntities(page.getPageElements());
        view.setPageNumber(page.getPageNumber());
        view.setPageCount(page.getPageCount());
    });
}