Examples with MultiFilter gdsc.smlm.results.filter.MultiFilter used on opensource projects

Example 1 with MultiFilter

use of gdsc.smlm.results.filter.MultiFilter in project GDSC-SMLM by aherbert.

the class FitConfiguration method getDefaultSmartFilter.

/**
	 * This returns the representation of this object as a smart filter. This ignores any current smart filter and
	 * only uses the standard filtering settings.
	 * 
	 * @return the smart filter if using this object as a smart filter.
	 */
public DirectFilter getDefaultSmartFilter() {
    double signal = getMinPhotons();
    float snr = (float) getSignalStrength();
    double minWidth = getMinWidthFactor();
    double maxWidth = getWidthFactor();
    double shift = getCoordinateShiftFactor();
    double eshift = 0;
    double precision = getPrecisionThreshold();
    DirectFilter f = (isPrecisionUsingBackground()) ? new MultiFilter2(signal, snr, minWidth, maxWidth, shift, eshift, precision) : new MultiFilter(signal, snr, minWidth, maxWidth, shift, eshift, precision);
    return f;
}

Example 2 with MultiFilter

use of gdsc.smlm.results.filter.MultiFilter in project GDSC-SMLM by aherbert.

the class FreeFilterResults method logDemoFilters.

public static void logDemoFilters(String title) {
    comment(title + " example filters");
    IJ.log("");
    comment("Filters are described using XML");
    comment("Multiple filters can be combined using AND/OR filters");
    IJ.log("");
    comment("Single filters");
    IJ.log("");
    demo(new WidthFilter(2));
    demo(new WidthFilter2(0.7, 2));
    demo(new SBRFilter(15));
    demo(new ShiftFilter(0.7));
    demo(new EShiftFilter(0.8));
    demo(new SignalFilter(1000));
    demo(new SNRFilter(10));
    demo(new SNRFilter2(10, 0.7, 2));
    demo(new ANRFilter(11));
    demo(new ANRFilter2(11, 0.75, 1.95));
    demo(new PrecisionFilter(30));
    demo(new PrecisionFilter2(30));
    demo(new SNRHysteresisFilter(50, 1, 2, 1, 10, 20));
    demo(new PrecisionHysteresisFilter(2, 0, 1, 0, 20, 30));
    demo(new TraceFilter(0.5, 1));
    demo(new CoordinateFilter(15.5f, 234.5f, 80.99f, 133f));
    demo(new MultiFilter(30, 45f, 0.7, 1.5, 0.5, 0.6, 45));
    demo(new MultiFilter2(30, 45f, 0.7, 1.5, 0.5, 0.6, 45));
    demo(new MultiHysteresisFilter(2, 0, 1, 0, 20, 10, 40f, 20f, 0.8, 0.2, 1.2, 0.4, 0.3, 0.8, 20, 30));
    demo(new MultiHysteresisFilter2(2, 0, 2, 1, 20, 10, 40f, 20f, 0.8, 0.2, 1.2, 0.4, 0.3, 0.8, 20, 30));
    comment("Combined filters");
    IJ.log("");
    demo(new AndFilter(new SNRFilter(10), new WidthFilter(2)));
    demo(new OrFilter(new SNRFilter(10), new PrecisionFilter(30)));
    demo(new OrFilter(new AndFilter(new SNRFilter(10), new PrecisionFilter(30)), new TraceFilter(0.5, 1)));
}