Examples with WidthFilter gdsc.smlm.results.filter.WidthFilter used on opensource projects

Example 1 with WidthFilter

use of gdsc.smlm.results.filter.WidthFilter in project GDSC-SMLM by aherbert.

the class CreateFilters method logDemoFilters.

private void logDemoFilters() {
    comment(TITLE + " example template filters");
    IJ.log("");
    comment("Filters are described using XML");
    comment("Filter attibutes that take the form 'min:max:increment' will be enumerated");
    comment("Note: This example is a subset. All filters are described in the user manual");
    IJ.log("");
    comment("Single filters");
    IJ.log("");
    demo(new SNRFilter(10), new String[] { "10:20:1" });
    demo(new PrecisionFilter(30), new String[] { "30:50:2" });
    IJ.log("");
    comment("Combined filters");
    IJ.log("");
    demo(new AndFilter(new SNRFilter(10), new WidthFilter(2)), new String[] { "10:20:1", "1.5:2.5:0.2" });
    demo(new OrFilter(new PrecisionFilter(30), new AndFilter(new SNRFilter(10), new WidthFilter(2))), new String[] { "30:40:2", "10:20:1", "1.5:2.5:0.2" });
    IJ.log("");
}

Example 2 with WidthFilter

use of gdsc.smlm.results.filter.WidthFilter in project GDSC-SMLM by aherbert.

the class FreeFilterResults method logDemoFilters.

public static void logDemoFilters(String title) {
    comment(title + " example filters");
    IJ.log("");
    comment("Filters are described using XML");
    comment("Multiple filters can be combined using AND/OR filters");
    IJ.log("");
    comment("Single filters");
    IJ.log("");
    demo(new WidthFilter(2));
    demo(new WidthFilter2(0.7, 2));
    demo(new SBRFilter(15));
    demo(new ShiftFilter(0.7));
    demo(new EShiftFilter(0.8));
    demo(new SignalFilter(1000));
    demo(new SNRFilter(10));
    demo(new SNRFilter2(10, 0.7, 2));
    demo(new ANRFilter(11));
    demo(new ANRFilter2(11, 0.75, 1.95));
    demo(new PrecisionFilter(30));
    demo(new PrecisionFilter2(30));
    demo(new SNRHysteresisFilter(50, 1, 2, 1, 10, 20));
    demo(new PrecisionHysteresisFilter(2, 0, 1, 0, 20, 30));
    demo(new TraceFilter(0.5, 1));
    demo(new CoordinateFilter(15.5f, 234.5f, 80.99f, 133f));
    demo(new MultiFilter(30, 45f, 0.7, 1.5, 0.5, 0.6, 45));
    demo(new MultiFilter2(30, 45f, 0.7, 1.5, 0.5, 0.6, 45));
    demo(new MultiHysteresisFilter(2, 0, 1, 0, 20, 10, 40f, 20f, 0.8, 0.2, 1.2, 0.4, 0.3, 0.8, 20, 30));
    demo(new MultiHysteresisFilter2(2, 0, 2, 1, 20, 10, 40f, 20f, 0.8, 0.2, 1.2, 0.4, 0.3, 0.8, 20, 30));
    comment("Combined filters");
    IJ.log("");
    demo(new AndFilter(new SNRFilter(10), new WidthFilter(2)));
    demo(new OrFilter(new SNRFilter(10), new PrecisionFilter(30)));
    demo(new OrFilter(new AndFilter(new SNRFilter(10), new PrecisionFilter(30)), new TraceFilter(0.5, 1)));
}

Example 3 with WidthFilter

use of gdsc.smlm.results.filter.WidthFilter in project GDSC-SMLM by aherbert.

the class FilterAnalysis method addSNRFilters.

private void addSNRFilters(List<FilterSet> filterSets) {
    if (!snrFilter)
        return;
    for (double w = minWidth; w <= maxWidth; w += incWidth) {
        WidthFilter wf = new WidthFilter((float) w);
        List<Filter> filters = new LinkedList<Filter>();
        for (int snr = minSnr; snr <= maxSnr; snr++) {
            filters.add(new AndFilter(wf, new SNRFilter(snr)));
        }
        filterSets.add(new FilterSet(filters));
    }
}

Example 4 with WidthFilter

use of gdsc.smlm.results.filter.WidthFilter in project GDSC-SMLM by aherbert.

the class FilterAnalysis method addSNRHysteresisFilters.

private void addSNRHysteresisFilters(List<FilterSet> filterSets) {
    if (!hysteresisSnrFilter)
        return;
    for (double w = minWidth; w <= maxWidth; w += incWidth) {
        WidthFilter wf = new WidthFilter((float) w);
        for (int snrGap = minSnrGap; snrGap <= maxSnrGap; snrGap += incSnrGap) {
            List<Filter> filters = new LinkedList<Filter>();
            for (int snr = minSnr; snr <= maxSnr; snr++) {
                filters.add(new AndFilter(wf, new SNRHysteresisFilter(2, 0, 1, 0, snr, snrGap)));
            }
            filterSets.add(new FilterSet(filters));
        }
    }
}