Examples with SkippedRifRecord gov.cms.bfd.model.rif.SkippedRifRecord used on opensource projects

Example 1 with SkippedRifRecord

use of gov.cms.bfd.model.rif.SkippedRifRecord in project beneficiary-fhir-data by CMSgov.

the class BeneficiaryTransformerV2Test method setup.

@BeforeEach
public void setup() {
    List<Object> parsedRecords = ServerTestUtils.parseData(Arrays.asList(StaticRifResourceGroup.SAMPLE_A.getResources()));
    // Pull out the base Beneficiary record and fix its HICN and MBI-HASH fields.
    beneficiary = parsedRecords.stream().filter(r -> r instanceof Beneficiary).map(r -> (Beneficiary) r).findFirst().get();
    beneficiary.getSkippedRifRecords().add(new SkippedRifRecord());
    beneficiary.setLastUpdated(Instant.now());
    beneficiary.setMbiHash(Optional.of("someMBIhash"));
    // Add the history records to the Beneficiary, but nill out the HICN fields.
    Set<BeneficiaryHistory> beneficiaryHistories = parsedRecords.stream().filter(r -> r instanceof BeneficiaryHistory).map(r -> (BeneficiaryHistory) r).filter(r -> beneficiary.getBeneficiaryId().equals(r.getBeneficiaryId())).collect(Collectors.toSet());
    beneficiary.getBeneficiaryHistories().addAll(beneficiaryHistories);
    // Add the MBI history records to the Beneficiary.
    Set<MedicareBeneficiaryIdHistory> beneficiaryMbis = parsedRecords.stream().filter(r -> r instanceof MedicareBeneficiaryIdHistory).map(r -> (MedicareBeneficiaryIdHistory) r).filter(r -> beneficiary.getBeneficiaryId().equals(r.getBeneficiaryId().orElse(null))).collect(Collectors.toSet());
    beneficiary.getMedicareBeneficiaryIdHistories().addAll(beneficiaryMbis);
    assertThat(beneficiary, is(notNullValue()));
    createPatient(RequestHeaders.getHeaderWrapper());
}

Example 2 with SkippedRifRecord

use of gov.cms.bfd.model.rif.SkippedRifRecord in project beneficiary-fhir-data by CMSgov.

the class RifLoader method process.

/**
 * @param recordsBatch the {@link RifRecordEvent}s to process
 * @param loadedFileBuilder the builder for the {@LoadedFile} associated with this batch
 * @param postgresBatch the {@link PostgreSqlCopyInserter} for the current set of {@link
 *     RifFilesEvent}s being processed
 * @return the {@link RifRecordLoadResult}s that model the results of the operation
 */
private List<RifRecordLoadResult> process(List<RifRecordEvent<?>> recordsBatch, long loadedFileId, PostgreSqlCopyInserter postgresBatch) {
    RifFileEvent fileEvent = recordsBatch.get(0).getFileEvent();
    MetricRegistry fileEventMetrics = fileEvent.getEventMetrics();
    RifFileType rifFileType = fileEvent.getFile().getFileType();
    if (rifFileType == RifFileType.BENEFICIARY_HISTORY) {
        for (RifRecordEvent<?> rifRecordEvent : recordsBatch) {
            hashBeneficiaryHistoryHicn(rifRecordEvent);
            hashBeneficiaryHistoryMbi(rifRecordEvent);
        }
    }
    // Only one of each failure/success Timer.Contexts will be applied.
    Timer.Context timerBatchSuccess = appState.getMetrics().timer(MetricRegistry.name(getClass().getSimpleName(), "recordBatches")).time();
    Timer.Context timerBatchTypeSuccess = fileEventMetrics.timer(MetricRegistry.name(getClass().getSimpleName(), "recordBatches", rifFileType.name())).time();
    Timer.Context timerBundleFailure = appState.getMetrics().timer(MetricRegistry.name(getClass().getSimpleName(), "recordBatches", "failed")).time();
    EntityManager entityManager = null;
    EntityTransaction txn = null;
    // TODO: refactor the following to be less of an indented mess
    try {
        entityManager = appState.getEntityManagerFactory().createEntityManager();
        txn = entityManager.getTransaction();
        txn.begin();
        List<RifRecordLoadResult> loadResults = new ArrayList<>(recordsBatch.size());
        /*
       * Dev Note: All timestamps of records in the batch and the LoadedBatch must be the same for data consistency.
       * The timestamp from the LoadedBatchBuilder is used.
       */
        LoadedBatchBuilder loadedBatchBuilder = new LoadedBatchBuilder(loadedFileId, recordsBatch.size());
        for (RifRecordEvent<?> rifRecordEvent : recordsBatch) {
            RecordAction recordAction = rifRecordEvent.getRecordAction();
            RifRecordBase record = rifRecordEvent.getRecord();
            LOGGER.trace("Loading '{}' record.", rifFileType);
            // Set lastUpdated to the same value for the whole batch
            record.setLastUpdated(Optional.of(loadedBatchBuilder.getTimestamp()));
            // Associate the beneficiary with this file loaded
            loadedBatchBuilder.associateBeneficiary(rifRecordEvent.getBeneficiaryId());
            LoadStrategy strategy = selectStrategy(recordAction);
            LoadAction loadAction;
            if (strategy == LoadStrategy.INSERT_IDEMPOTENT) {
                // Check to see if record already exists.
                Timer.Context timerIdempotencyQuery = fileEventMetrics.timer(MetricRegistry.name(getClass().getSimpleName(), "idempotencyQueries")).time();
                Object recordId = appState.getEntityManagerFactory().getPersistenceUnitUtil().getIdentifier(record);
                Objects.requireNonNull(recordId);
                Object recordInDb = entityManager.find(record.getClass(), recordId);
                timerIdempotencyQuery.close();
                // Log if we have a non-2022 enrollment year INSERT
                if (isBackdatedBene(rifRecordEvent)) {
                    Beneficiary bene = (Beneficiary) rifRecordEvent.getRecord();
                    LOGGER.info("Inserted beneficiary with non-2022 enrollment year (beneficiaryId={})", bene.getBeneficiaryId());
                }
                if (recordInDb == null) {
                    loadAction = LoadAction.INSERTED;
                    tweakIfBeneficiary(entityManager, loadedBatchBuilder, rifRecordEvent);
                    entityManager.persist(record);
                // FIXME Object recordInDbAfterUpdate = entityManager.find(record.getClass(), recordId);
                } else {
                    loadAction = LoadAction.DID_NOTHING;
                }
            } else if (strategy == LoadStrategy.INSERT_UPDATE_NON_IDEMPOTENT) {
                if (rifRecordEvent.getRecordAction().equals(RecordAction.INSERT)) {
                    loadAction = LoadAction.INSERTED;
                    // Log if we have a non-2022 enrollment year INSERT
                    if (isBackdatedBene(rifRecordEvent)) {
                        Beneficiary bene = (Beneficiary) rifRecordEvent.getRecord();
                        LOGGER.info("Inserted beneficiary with non-2022 enrollment year (beneficiaryId={})", bene.getBeneficiaryId());
                    }
                    tweakIfBeneficiary(entityManager, loadedBatchBuilder, rifRecordEvent);
                    entityManager.persist(record);
                } else if (rifRecordEvent.getRecordAction().equals(RecordAction.UPDATE)) {
                    loadAction = LoadAction.UPDATED;
                    // Skip this record if the year is not 2022 and its an update.
                    if (isBackdatedBene(rifRecordEvent)) {
                        /*
               * Serialize the record's CSV data back to actual RIF/CSV, as that's how we'll store
               * it in the DB.
               */
                        StringBuffer rifData = new StringBuffer();
                        try (CSVPrinter csvPrinter = new CSVPrinter(rifData, RifParsingUtils.CSV_FORMAT)) {
                            for (CSVRecord csvRow : rifRecordEvent.getRawCsvRecords()) {
                                csvPrinter.printRecord(csvRow);
                            }
                        }
                        // Save the skipped record to the DB.
                        SkippedRifRecord skippedRifRecord = new SkippedRifRecord(rifRecordEvent.getFileEvent().getParentFilesEvent().getTimestamp(), SkipReasonCode.DELAYED_BACKDATED_ENROLLMENT_BFD_1566, rifRecordEvent.getFileEvent().getFile().getFileType().name(), rifRecordEvent.getRecordAction(), ((Beneficiary) record).getBeneficiaryId(), rifData.toString());
                        entityManager.persist(skippedRifRecord);
                        LOGGER.info("Skipped RIF record, due to '{}'.", skippedRifRecord.getSkipReason());
                    } else {
                        tweakIfBeneficiary(entityManager, loadedBatchBuilder, rifRecordEvent);
                        entityManager.merge(record);
                    }
                } else {
                    throw new BadCodeMonkeyException(String.format("Unhandled %s: '%s'.", RecordAction.class, rifRecordEvent.getRecordAction()));
                }
            } else
                throw new BadCodeMonkeyException();
            LOGGER.trace("Loaded '{}' record.", rifFileType);
            fileEventMetrics.meter(MetricRegistry.name(getClass().getSimpleName(), "records", loadAction.name())).mark(1);
            loadResults.add(new RifRecordLoadResult(rifRecordEvent, loadAction));
        }
        LoadedBatch loadedBatch = loadedBatchBuilder.build();
        entityManager.persist(loadedBatch);
        txn.commit();
        // Update the metrics now that things have been pushed.
        timerBatchSuccess.stop();
        timerBatchTypeSuccess.stop();
        return loadResults;
    } catch (Throwable t) {
        timerBundleFailure.stop();
        fileEventMetrics.meter(MetricRegistry.name(getClass().getSimpleName(), "recordBatches", "failed")).mark(1);
        LOGGER.warn("Failed to load '{}' record.", rifFileType, t);
        throw new RifLoadFailure(recordsBatch, t);
    } finally {
        /*
       * Some errors (e.g. HSQL constraint violations) seem to cause the
       * rollback to fail. Extra error handling is needed here, too, to
       * ensure that the failing data is captured.
       */
        try {
            if (txn != null && txn.isActive())
                txn.rollback();
        } catch (Throwable t) {
            timerBundleFailure.stop();
            fileEventMetrics.meter(MetricRegistry.name(getClass().getSimpleName(), "recordBatches", "failed")).mark(1);
            LOGGER.warn("Failed to load '{}' record.", rifFileType, t);
            throw new RifLoadFailure(recordsBatch, t);
        }
        if (entityManager != null)
            entityManager.close();
    }
}

Example 3 with SkippedRifRecord

use of gov.cms.bfd.model.rif.SkippedRifRecord in project beneficiary-fhir-data by CMSgov.

the class BeneficiaryTransformerTest method transformSampleARecordWithSkippedRecord.

/**
 * Verifies that {@link
 * gov.cms.bfd.server.war.stu3.providers.BeneficiaryTransformer#transform(Beneficiary)} works as
 * expected when run against the {@link StaticRifResource#SAMPLE_A_BENES} {@link Beneficiary},
 * when there is a matching {@link SkippedRifRecord} for the {@link Beneficiary}.
 */
@Test
public void transformSampleARecordWithSkippedRecord() {
    Beneficiary beneficiary = loadSampleABeneficiary();
    beneficiary.getSkippedRifRecords().add(new SkippedRifRecord());
    RequestHeaders requestHeader = getRHwithIncldIdntityHdr("false");
    Patient patient = BeneficiaryTransformer.transform(new MetricRegistry(), beneficiary, requestHeader);
    assertEquals(1, patient.getMeta().getTag().size());
    TransformerTestUtils.assertCodingEquals(TransformerConstants.CODING_SYSTEM_BFD_TAGS, TransformerConstants.CODING_BFD_TAGS_DELAYED_BACKDATED_ENROLLMENT, patient.getMeta().getTag().get(0));
}