Examples with TextWindow ij.text.TextWindow used on opensource projects

Example 46 with TextWindow

use of ij.text.TextWindow in project TrakEM2 by trakem2.

the class Utils method createResultsTable.

/**
 * Creates a new ResultsTable with the given window title and column titles, and 2 decimals of precision, or if one exists for the given window title, returns it.
 */
public static final ResultsTable createResultsTable(final String title, final String[] columns) {
    try {
        return new TaskOnEDT<ResultsTable>(new Callable<ResultsTable>() {

            @Override
            public ResultsTable call() {
                final TextWindow tw = (TextWindow) WindowManager.getFrame(title);
                if (null != tw) {
                    // hacking again ... missing a getResultsTable() method in TextWindow
                    final ResultsTable rt = (ResultsTable) Utils.getField(tw.getTextPanel(), "rt");
                    // assumes columns will be identical
                    if (null != rt)
                        return rt;
                }
                // else create a new one
                final ResultsTable rt = new ResultsTable();
                rt.setPrecision(2);
                for (int i = 0; i < columns.length; i++) rt.setHeading(i, columns[i]);
                // 
                return rt;
            }
        }).get();
    } catch (final Throwable t) {
        IJError.print(t);
        return null;
    }
}

Example 47 with TextWindow

use of ij.text.TextWindow in project GDSC-SMLM by aherbert.

the class TraceMolecules method createSummaryTable.

private Consumer<String> createSummaryTable() {
    if (java.awt.GraphicsEnvironment.isHeadless()) {
        if (logHeader.compareAndSet(true, false)) {
            IJ.log(createHeader());
        }
        return IJ::log;
    }
    TextWindow window = summaryTable.get();
    if (window == null || !window.isVisible()) {
        window = new TextWindow(pluginTitle + " Data Summary", createHeader(), "", 800, 300);
        window.setVisible(true);
        summaryTable.set(window);
    }
    return window::append;
}

Example 48 with TextWindow

use of ij.text.TextWindow in project GDSC-SMLM by aherbert.

the class SummariseResults method createSummaryTable.

private static TextWindow createSummaryTable() {
    final TextWindow summary = ImageJUtils.refresh(summaryRef, () -> {
        final TextWindow window = new TextWindow("Peak Results Summary", createHeader(), "", 800, 300);
        window.getTextPanel().addMouseListener(ShowStatisticsListener.INSTANCE);
        return window;
    });
    // This could be optional but at current there is no dialog and it seems unnecessary
    clearSummaryTable(summary);
    return summary;
}

Example 49 with TextWindow

use of ij.text.TextWindow in project GDSC-SMLM by aherbert.

the class SummariseResults method showSummary.

private static void showSummary(Collection<MemoryPeakResults> results, int[] removeNullResults) {
    final TextWindow summary = createSummaryTable();
    final StringBuilder sb = new StringBuilder();
    try (BufferedTextWindow tw = new BufferedTextWindow(summary)) {
        for (final MemoryPeakResults result : results) {
            tw.append(createSummary(sb, result, removeNullResults));
        }
        tw.append("");
    }
    summary.toFront();
}

Example 50 with TextWindow

use of ij.text.TextWindow in project GDSC-SMLM by aherbert.

the class ResultsMatchCalculator method runCompareCoordinates.

@SuppressWarnings("null")
private void runCompareCoordinates(MemoryPeakResults results1, MemoryPeakResults results2) {
    final boolean requirePairs = settings.showPairs || settings.isSaveClassifications();
    final boolean saveMatched = settings.isSaveMatched();
    final boolean saveUnmatched = settings.isSaveUnmatched();
    final TextFilePeakResults fileResults = createFilePeakResults(results2);
    final List<PointPair> allMatches = new LinkedList<>();
    final List<PointPair> pairs = (requirePairs) ? new LinkedList<>() : null;
    final double maxDistance = settings.distanceThreshold + settings.increments * settings.delta;
    // Divide the results into time points
    final TIntObjectHashMap<List<Coordinate>> actualCoordinates = getCoordinates(results1, settings.coordinateMethod1);
    final TIntObjectHashMap<List<Coordinate>> predictedCoordinates = getCoordinates(results2, settings.coordinateMethod2);
    int n1 = 0;
    int n2 = 0;
    // Process each time point
    for (final int t : getTimepoints(actualCoordinates, predictedCoordinates)) {
        final Coordinate[] actual = getCoordinates(actualCoordinates, t);
        final Coordinate[] predicted = getCoordinates(predictedCoordinates, t);
        final List<Coordinate> tp = null;
        List<Coordinate> fp = null;
        List<Coordinate> fn = null;
        final List<PointPair> matches = new LinkedList<>();
        if (requirePairs) {
            fp = new LinkedList<>();
            fn = new LinkedList<>();
        }
        MatchCalculator.analyseResults2D(actual, predicted, maxDistance, tp, fp, fn, matches);
        // Aggregate
        n1 += actual.length;
        n2 += predicted.length;
        allMatches.addAll(matches);
        if (settings.showPairs) {
            pairs.addAll(matches);
            for (final Coordinate c : fn) {
                pairs.add(new PointPair(c, null));
            }
            for (final Coordinate c : fp) {
                pairs.add(new PointPair(null, c));
            }
        }
        if (fileResults != null) {
            // Matches are marked in the original value with 1 for true, 0 for false
            if (saveMatched) {
                for (final PointPair pair : matches) {
                    PeakResult result = ((PeakResultPoint) pair.getPoint2()).getPeakResult();
                    result = result.copy();
                    result.setOrigValue(1);
                    fileResults.add(result);
                }
            }
            if (saveUnmatched) {
                for (final Coordinate c : fp) {
                    PeakResult result = ((PeakResultPoint) c).getPeakResult();
                    result = result.copy();
                    result.setOrigValue(0);
                    fileResults.add(result);
                }
            }
        }
    }
    if (fileResults != null) {
        fileResults.end();
    }
    final boolean doIdAnalysis1 = settings.idAnalysis && haveIds(results1);
    final boolean doIdAnalysis2 = settings.idAnalysis && haveIds(results2);
    // Create output.
    // This supports headless mode with just the results table
    // or graphical mode with a results table and pairs window.
    final boolean headless = java.awt.GraphicsEnvironment.isHeadless();
    TextWindow resultsWindow = null;
    if (!headless) {
        resultsWindow = (settings.showTable) ? createResultsWindow(doIdAnalysis1 || doIdAnalysis2) : null;
        showPairs(results1, pairs, resultsWindow);
    }
    showResults(results1, results2, allMatches, n1, n2, doIdAnalysis1, doIdAnalysis2, resultsWindow);
    savePairs(results1, results2, allMatches);
}