Examples with Project ini.trakem2.Project used on opensource projects

Example 1 with Project

use of ini.trakem2.Project in project camel by apache.

the class ProjectProducer method doUpdate.

private void doUpdate(Exchange exchange) {
    final Message msg = exchange.getIn();
    final Project in = messageToProject(msg);
    final Project out = osV3Client.identity().projects().update(in);
    msg.setBody(out);
}

Example 2 with Project

use of ini.trakem2.Project in project camel by apache.

the class ProjectProducer method messageToProject.

private Project messageToProject(Message message) {
    Project project = message.getBody(Project.class);
    if (project == null) {
        Map headers = message.getHeaders();
        ProjectBuilder builder = Builders.project();
        ObjectHelper.notEmpty(message.getHeader(OpenstackConstants.NAME, String.class), "Name");
        builder.name(message.getHeader(OpenstackConstants.NAME, String.class));
        if (headers.containsKey(KeystoneConstants.DOMAIN_ID)) {
            builder.domainId(message.getHeader(KeystoneConstants.DOMAIN_ID, String.class));
        }
        if (headers.containsKey(KeystoneConstants.DESCRIPTION)) {
            builder.description(message.getHeader(KeystoneConstants.DESCRIPTION, String.class));
        }
        if (headers.containsKey(KeystoneConstants.PARENT_ID)) {
            builder.parentId(message.getHeader(KeystoneConstants.PARENT_ID, String.class));
        }
        project = builder.build();
    }
    return project;
}

Example 3 with Project

use of ini.trakem2.Project in project camel by apache.

the class ProjectProducer method doGet.

private void doGet(Exchange exchange) {
    final Message msg = exchange.getIn();
    final String id = msg.getHeader(OpenstackConstants.ID, String.class);
    ObjectHelper.notEmpty(id, "Project ID");
    final Project result = osV3Client.identity().projects().get(id);
    msg.setBody(result);
}

Example 4 with Project

use of ini.trakem2.Project in project camel by apache.

the class ProjectProducerTest method setUp.

@Before
public void setUp() {
    producer = new ProjectProducer(endpoint, client);
    when(projectService.create(any(Project.class))).thenReturn(testOSproject);
    when(projectService.get(anyString())).thenReturn(testOSproject);
    List<Project> getAllList = new ArrayList<>();
    getAllList.add(testOSproject);
    getAllList.add(testOSproject);
    doReturn(getAllList).when(projectService).list();
    dummyProject = createProject();
    when(testOSproject.getName()).thenReturn(dummyProject.getName());
    when(testOSproject.getDescription()).thenReturn(dummyProject.getDescription());
}

Example 5 with Project

use of ini.trakem2.Project in project TrakEM2 by trakem2.

the class DBLoader method importStackAsPatches.

/**
 * Returns the last Patch.
 */
protected Patch importStackAsPatches(final Project project, final Layer first_layer, final double x, final double y, final ImagePlus imp_stack, final boolean as_copy, final String filepath) {
    double pos_x = Double.MAX_VALUE != x ? x : first_layer.getLayerWidth() / 2 - imp_stack.getWidth() / 2;
    double pos_y = Double.MAX_VALUE != y ? y : first_layer.getLayerHeight() / 2 - imp_stack.getHeight() / 2;
    final double thickness = first_layer.getThickness();
    final String title = Utils.removeExtension(imp_stack.getTitle()).replace(' ', '_');
    Utils.showProgress(0);
    Patch previous_patch = null;
    final int n = imp_stack.getStackSize();
    for (int i = 1; i <= n; i++) {
        Layer layer = first_layer;
        double z = first_layer.getZ() + (i - 1) * thickness;
        // will create new layer if not found
        if (i > 1)
            layer = first_layer.getParent().getLayer(z, thickness, true);
        if (null == layer) {
            Utils.log("Display.importStack: could not create new layers.");
            return null;
        }
        ImageProcessor ip = imp_stack.getStack().getProcessor(i);
        if (as_copy)
            ip = ip.duplicate();
        ImagePlus imp_patch_i = new ImagePlus(title + "__slice=" + i, ip);
        String label = imp_stack.getStack().getSliceLabel(i);
        if (null == label)
            label = "";
        Patch patch = new Patch(project, label + " " + title + " " + i, pos_x, pos_y, imp_patch_i);
        layer.add(patch);
        if (null != previous_patch)
            patch.link(previous_patch);
        previous_patch = patch;
        Utils.showProgress(i * (1.0 / n));
    }
    Utils.showProgress(1.0);
    // return the last Patch
    return previous_patch;
}