Examples with Project ini.trakem2.Project used on opensource projects

Example 71 with Project

use of ini.trakem2.Project in project TrakEM2 by trakem2.

the class Display method importNextImage.

protected Bureaucrat importNextImage() {
    final Worker worker = new // / all this verbosity is what happens when functions are not first class citizens. I could abstract it away by passing a string name "importImage" and invoking it with reflection, but that is an even bigger PAIN
    Worker(// / all this verbosity is what happens when functions are not first class citizens. I could abstract it away by passing a string name "importImage" and invoking it with reflection, but that is an even bigger PAIN
    "Import image") {

        @Override
        public void run() {
            startedWorking();
            try {
                final Rectangle srcRect = canvas.getSrcRect();
                // - imp.getWidth() / 2;
                final int x = srcRect.x + srcRect.width / 2;
                // - imp.getHeight()/ 2;
                final int y = srcRect.y + srcRect.height / 2;
                final Patch p = project.getLoader().importNextImage(project, x, y);
                if (null == p) {
                    Utils.showMessage("Could not open next image.");
                    finishedWorking();
                    return;
                }
                Display.this.getLayerSet().addLayerContentStep(layer);
                // will add it to the proper Displays
                layer.add(p);
                Display.this.getLayerSet().addLayerContentStep(layer);
            } catch (final Exception e) {
                IJError.print(e);
            }
            finishedWorking();
        }
    };
    return Bureaucrat.createAndStart(worker, getProject());
}

Example 72 with Project

use of ini.trakem2.Project in project TrakEM2 by trakem2.

the class Project method getUniqueTypes.

/**
 * Returns a list of existing unique types in the template tree
 * (thus the 'project' type is not included, nor the label).
 * The basic types are guaranteed to be present even if there are no instances in the template tree.
 * As a side effect, this method populates the HashMap of unique TemplateThing types.
 */
public String[] getUniqueTypes() {
    synchronized (ht_unique_tt) {
        // ensure the basic types (pipe, ball, profile, profile_list) are present
        if (!ht_unique_tt.containsKey("profile"))
            ht_unique_tt.put("profile", new TemplateThing("profile"));
        if (!ht_unique_tt.containsKey("profile_list")) {
            TemplateThing tpl = new TemplateThing("profile_list");
            tpl.addChild((TemplateThing) ht_unique_tt.get("profile"));
            ht_unique_tt.put("profile_list", tpl);
        }
        if (!ht_unique_tt.containsKey("pipe"))
            ht_unique_tt.put("pipe", new TemplateThing("pipe"));
        if (!ht_unique_tt.containsKey("polyline"))
            ht_unique_tt.put("polyline", new TemplateThing("polyline"));
        if (!ht_unique_tt.containsKey("treeline"))
            ht_unique_tt.put("treeline", new TemplateThing("treeline"));
        if (!ht_unique_tt.containsKey("areatree"))
            ht_unique_tt.put("areatree", new TemplateThing("areatree"));
        if (!ht_unique_tt.containsKey("connector"))
            ht_unique_tt.put("connector", new TemplateThing("connector"));
        if (!ht_unique_tt.containsKey("ball"))
            ht_unique_tt.put("ball", new TemplateThing("ball"));
        if (!ht_unique_tt.containsKey("area_list"))
            ht_unique_tt.put("area_list", new TemplateThing("area_list"));
        if (!ht_unique_tt.containsKey("dissector"))
            ht_unique_tt.put("dissector", new TemplateThing("dissector"));
        // this should be done automagically by querying the classes in the package ... but java can't do that without peeking into the .jar .class files. Buh.
        TemplateThing project_tt = ht_unique_tt.remove("project");
        /* // debug
		for (Iterator it = ht_unique_tt.keySet().iterator(); it.hasNext(); ) {
			Utils.log2("class: " + it.next().getClass().getName());
		} */
        final String[] ut = new String[ht_unique_tt.size()];
        ht_unique_tt.keySet().toArray(ut);
        ht_unique_tt.put("project", project_tt);
        Arrays.sort(ut);
        return ut;
    }
}

Example 73 with Project

use of ini.trakem2.Project in project TrakEM2 by trakem2.

the class Project method destroy.

public boolean destroy() {
    if (null == loader) {
        return true;
    }
    if (loader.hasChanges() && !getBooleanProperty("no_shutdown_hook")) {
        // DBLoader always returns false
        if (ControlWindow.isGUIEnabled()) {
            final YesNoDialog yn = ControlWindow.makeYesNoDialog("TrakEM2", "There are unsaved changes in project " + title + ". Save them?");
            if (yn.yesPressed()) {
                save();
            }
        } else {
            Utils.log2("WARNING: closing project '" + title + "' with unsaved changes.");
        }
    }
    try {
        if (null != autosaving)
            autosaving.cancel(true);
    } catch (Throwable t) {
    }
    al_open_projects.remove(this);
    // flush all memory
    if (null != loader) {
        // the last project is destroyed twice for some reason, if several are open. This is a PATCH
        // and disconnect
        loader.destroy();
        loader = null;
    }
    if (null != layer_set)
        layer_set.destroy();
    // AFTER loader.destroy() call.
    ControlWindow.remove(this);
    if (null != template_tree)
        template_tree.destroy();
    if (null != project_tree)
        project_tree.destroy();
    if (null != layer_tree)
        layer_tree.destroy();
    Polyline.flushTraceCache(this);
    // flag to mean: we're closing
    this.template_tree = null;
    // close all open Displays
    Display.close(this);
    Search.removeTabs(this);
    synchronized (ptcache) {
        ptcache.clear();
    }
    return true;
}

Example 74 with Project

use of ini.trakem2.Project in project TrakEM2 by trakem2.

the class Project method removeAll.

/**
 * Remove any set of Displayable objects from the Layer, LayerSet and Project Tree as necessary.
 *  ASSUMES there aren't any nested LayerSet objects in @param col.
 */
public final boolean removeAll(final Set<Displayable> col, final DefaultMutableTreeNode top_node) {
    // 0. Sort into Displayable and ZDisplayable
    final Set<ZDisplayable> zds = new HashSet<ZDisplayable>();
    final List<Displayable> ds = new ArrayList<Displayable>();
    for (final Displayable d : col) {
        if (d instanceof ZDisplayable) {
            zds.add((ZDisplayable) d);
        } else {
            ds.add(d);
        }
    }
    // Displayable:
    // 1. First the Profile from the Project Tree, one by one,
    // while creating a map of Layer vs Displayable list to remove in that layer:
    final HashMap<Layer, Set<Displayable>> ml = new HashMap<Layer, Set<Displayable>>();
    for (final Iterator<Displayable> it = ds.iterator(); it.hasNext(); ) {
        final Displayable d = it.next();
        if (d.getClass() == Profile.class) {
            if (!project_tree.remove(false, findProjectThing(d), null)) {
                // like Profile.remove2
                Utils.log("Could NOT delete " + d);
                continue;
            }
            // remove the Profile
            it.remove();
            continue;
        }
        // The map of Layer vs Displayable list
        Set<Displayable> l = ml.get(d.getLayer());
        if (null == l) {
            l = new HashSet<Displayable>();
            ml.put(d.getLayer(), l);
        }
        l.add(d);
    }
    // 2. Then the rest, in bulk:
    if (ml.size() > 0) {
        for (final Map.Entry<Layer, Set<Displayable>> e : ml.entrySet()) {
            e.getKey().removeAll(e.getValue());
        }
    }
    // 3. Stacks
    if (zds.size() > 0) {
        final Set<ZDisplayable> stacks = new HashSet<ZDisplayable>();
        for (final Iterator<ZDisplayable> it = zds.iterator(); it.hasNext(); ) {
            final ZDisplayable zd = it.next();
            if (zd.getClass() == Stack.class) {
                it.remove();
                stacks.add(zd);
            }
        }
        layer_set.removeAll(stacks);
    }
    // 4. ZDisplayable: bulk removal
    if (zds.size() > 0) {
        // 1. From the Project Tree:
        Set<Displayable> not_removed = project_tree.remove(zds, top_node);
        // 2. Then only those successfully removed, from the LayerSet:
        zds.removeAll(not_removed);
        layer_set.removeAll(zds);
    }
    // TODO
    return true;
}

Example 75 with Project

use of ini.trakem2.Project in project TrakEM2 by trakem2.

the class Project method save.

/**
 * Save the project regardless of what getLoader().hasChanges() reports.
 */
public String save() {
    // let it repaint the log window
    Thread.yield();
    XMLOptions options = new XMLOptions();
    options.overwriteXMLFile = true;
    options.export_images = false;
    options.patches_dir = null;
    options.include_coordinate_transform = true;
    String path = loader.save(this, options);
    if (null != path)
        restartAutosaving();
    return path;
}