Examples with TemplateThing ini.trakem2.tree.TemplateThing used on opensource projects

Example 6 with TemplateThing

use of ini.trakem2.tree.TemplateThing in project TrakEM2 by trakem2.

the class TMLHandler method makeProjectThing.

private ProjectThing makeProjectThing(String type, final HashMap<String, String> ht_attributes) {
    try {
        type = type.toLowerCase();
        // debug:
        // Utils.log2("TMLHander.makeProjectThing for type=" + type);
        long id = -1;
        final String sid = ht_attributes.remove("id");
        if (null != sid) {
            id = Long.parseLong(sid);
        }
        long oid = -1;
        final String soid = ht_attributes.remove("oid");
        if (null != soid) {
            oid = Long.parseLong(soid);
        }
        // default: collapsed
        Boolean expanded = new Boolean(false);
        Object eob = ht_attributes.remove("expanded");
        if (null != eob) {
            expanded = new Boolean((String) eob);
        }
        String title = ht_attributes.remove("title");
        TemplateThing tt = this.project.getTemplateThing(type);
        if (null == tt) {
            Utils.log("No template for type " + type);
            return null;
        }
        ProjectThing pt = new ProjectThing(tt, this.project, id, null == title ? type : title, null);
        pt.addToDatabase();
        ht_pt_expanded.put(pt, expanded);
        // store the oid vs. pt relationship to fill in the object later.
        if (-1 != oid) {
            ht_oid_pt.put(new Long(oid), pt);
        }
        return pt;
    } catch (Exception e) {
        IJError.print(e);
    }
    // default:
    return null;
}

Example 7 with TemplateThing

use of ini.trakem2.tree.TemplateThing in project TrakEM2 by trakem2.

the class TMLHandler method getProjectData.

/**
 * returns 4 objects packed in an array:
 *	 <pre>
 *	 [0] = root TemplateThing
 *	 [1] = root ProjectThing (contains Project instance)
 *	 [2] = root LayerThing (contains the top-level LayerSet)
 *	 [3] = expanded states of all ProjectThing objects
 *	 </pre>
 * <p>
 * Also, triggers the reconstruction of links and assignment of Displayable objects to their layer.
 * </p>
 */
public Object[] getProjectData(final boolean open_displays) {
    if (null == project)
        return null;
    this.open_displays = open_displays;
    // Links exist between Displayable objects.
    for (final Displayable d : ht_displayables.values()) {
        String olinks = ht_links.get(d);
        // not linked
        if (null == olinks)
            continue;
        String[] links = olinks.split(",");
        Long lid = null;
        for (int i = 0; i < links.length; i++) {
            try {
                lid = new Long(links[i]);
            } catch (NumberFormatException nfe) {
                Utils.log2("Ignoring incorrectly formated link '" + links[i] + "' for ob " + d);
                continue;
            }
            Displayable partner = ht_displayables.get(lid);
            if (null != partner)
                d.link(partner, false);
            else
                Utils.log("TMLHandler: can't find partner with id=" + links[i] + " for Displayable with id=" + d.getId());
        }
    }
    // 1.2 - Reconstruct linked properties
    for (final Map.Entry<Displayable, Map<Long, Map<String, String>>> lpe : all_linked_props.entrySet()) {
        final Displayable origin = lpe.getKey();
        for (final Map.Entry<Long, Map<String, String>> e : lpe.getValue().entrySet()) {
            final Displayable target = ht_displayables.get(e.getKey());
            if (null == target) {
                Utils.log("Setting linked properties for origin " + origin.getId() + ":\n\t* Could not find target displayable #" + e.getKey());
                continue;
            }
            origin.setLinkedProperties(target, e.getValue());
        }
    }
    // 2 - Add Displayable objects to ProjectThing that can contain them
    for (final Map.Entry<Long, ProjectThing> entry : ht_oid_pt.entrySet()) {
        ProjectThing pt = entry.getValue();
        Object od = ht_displayables.remove(entry.getKey());
        // Utils.log("==== processing: Displayable [" + od + "]  vs. ProjectThing [" + pt + "]");
        if (null != od) {
            pt.setObject(od);
        } else {
            Utils.log("#### Failed to find a Displayable for ProjectThing " + pt + " #####");
        }
    }
    // 3 - Assign a layer pointer to ZDisplayable objects
    for (final ZDisplayable zd : ht_zdispl.values()) {
        // zd.setLayer((Layer)zd.getLayerSet().getLayers().get(0));
        zd.setLayer(zd.getLayerSet().getLayer(0));
    }
    // 4 - Assign layers to Treeline nodes
    for (final Layer la : al_layers) {
        final List<Node<?>> list = node_layer_table.remove(la.getId());
        if (null == list)
            continue;
        for (final Node<?> nd : list) nd.setLayer(la);
    }
    if (!node_layer_table.isEmpty()) {
        Utils.log("ERROR: node_layer_table is not empty!");
    }
    // 5 - Assign root nodes to Treelines, now that all nodes have a layer
    for (final Map.Entry<Tree<?>, Node<?>> e : tree_root_nodes.entrySet()) {
        if (null == e.getValue()) {
            // Utils.log2("Ignoring, applies to new Treeline format only.");
            continue;
        }
        // Can't compile with <?>
        // will generate node caches of each Treeline
        e.getKey().setRoot((Node) e.getValue());
    }
    tree_root_nodes.clear();
    // Assign colors to nodes
    for (final Map.Entry<Color, Collection<Node<?>>> e : node_colors.entrySet()) {
        for (final Node<?> nd : e.getValue()) {
            nd.setColor(e.getKey());
        }
    }
    node_colors.clear();
    // 6 - Run legacy operations
    for (final Runnable r : legacy) {
        r.run();
    }
    try {
        // Create a table with all layer ids vs layer instances:
        final HashMap<Long, Layer> ht_lids = new HashMap<Long, Layer>();
        for (final Layer layer : al_layers) {
            ht_lids.put(new Long(layer.getId()), layer);
        }
        // Spawn threads to recreate buckets, starting from the subset of displays to open
        int n = Runtime.getRuntime().availableProcessors();
        switch(n) {
            case 1:
                break;
            case 2:
            case 3:
            case 4:
                n--;
                break;
            default:
                n -= 2;
                break;
        }
        final ExecutorService exec = Utils.newFixedThreadPool(n, "TMLHandler-recreateBuckets");
        final Set<Long> dlids = new HashSet<Long>();
        final LayerSet layer_set = (LayerSet) root_lt.getObject();
        final List<Future<?>> fus = new ArrayList<Future<?>>();
        final List<Future<?>> fus2 = new ArrayList<Future<?>>();
        for (final HashMap<String, String> ht_attributes : al_displays) {
            String ob = ht_attributes.get("layer_id");
            if (null == ob)
                continue;
            final Long lid = new Long(ob);
            dlids.add(lid);
            final Layer la = ht_lids.get(lid);
            if (null == la) {
                ht_lids.remove(lid);
                continue;
            }
            // to open later:
            new Display(project, Long.parseLong(ht_attributes.get("id")), la, ht_attributes);
            fus.add(exec.submit(new Runnable() {

                public void run() {
                    la.recreateBuckets();
                }
            }));
        }
        fus.add(exec.submit(new Runnable() {

            public void run() {
                // only for ZDisplayable
                layer_set.recreateBuckets(false);
            }
        }));
        // Ensure launching:
        if (dlids.isEmpty() && layer_set.size() > 0) {
            dlids.add(layer_set.getLayer(0).getId());
        }
        final List<Layer> layers = layer_set.getLayers();
        for (final Long lid : new HashSet<Long>(dlids)) {
            fus.add(exec.submit(new Runnable() {

                public void run() {
                    int start = layer_set.indexOf(layer_set.getLayer(lid.longValue()));
                    int next = start + 1;
                    int prev = start - 1;
                    while (next < layer_set.size() || prev > -1) {
                        if (prev > -1) {
                            final Layer lprev = layers.get(prev);
                            synchronized (dlids) {
                                if (dlids.add(lprev.getId())) {
                                    // returns true if not there already
                                    fus2.add(exec.submit(new Runnable() {

                                        public void run() {
                                            lprev.recreateBuckets();
                                        }
                                    }));
                                }
                            }
                            prev--;
                        }
                        if (next < layers.size()) {
                            final Layer lnext = layers.get(next);
                            synchronized (dlids) {
                                if (dlids.add(lnext.getId())) {
                                    // returns true if not there already
                                    fus2.add(exec.submit(new Runnable() {

                                        public void run() {
                                            lnext.recreateBuckets();
                                        }
                                    }));
                                }
                            }
                            next++;
                        }
                    }
                    Utils.log2("done recreateBuckets chunk");
                }
            }));
        }
        Utils.wait(fus);
        exec.submit(new Runnable() {

            public void run() {
                Utils.log2("waiting for TMLHandler fus...");
                Utils.wait(fus2);
                Utils.log2("done waiting TMLHandler fus.");
                exec.shutdown();
            }
        });
    } catch (Throwable t) {
        IJError.print(t);
    }
    return new Object[] { root_tt, root_pt, root_lt, ht_pt_expanded };
}

Example 8 with TemplateThing

use of ini.trakem2.tree.TemplateThing in project TrakEM2 by trakem2.

the class DefaultTreeTransferHandler method canPerformAction.

public boolean canPerformAction(DNDTree target, DefaultMutableTreeNode dragged_node, int action, Point location) {
    // prevent drags from non-tree components
    if (null == dragged_node)
        return false;
    // Can't drop onto a TemplateTree
    if (target instanceof TemplateTree) {
        return false;
    }
    // Can't drag a node that contains a Project!
    if (dragged_node.getUserObject() instanceof ProjectThing && ((ProjectThing) dragged_node.getUserObject()).getObject() instanceof Project) {
        return false;
    }
    // Can't drag basic object nodes from a template tree RECONSIDERED, I like it even if it looks inconsistent (but types are types!)
    /*
		if (dragged_node.getUserObject() instanceof TemplateThing && project.isBasicType(((Thing)dragged_node.getUserObject()).getType())) {
			return false;
		}
		*/
    // else, the target has to be not null
    TreePath pathTarget = target.getPathForLocation(location.x, location.y);
    if (pathTarget == null) {
        target.setSelectionPath(null);
        return false;
    }
    /* // debug
		if (action == DnDConstants.ACTION_COPY) {
			Utils.log("can drop: Action copy");
		} else if (action == DnDConstants.ACTION_MOVE) {
			Utils.log("can drop: Action move");
		} else {
			Utils.log("can drop: Unexpected action: " + action);
		}
		*/
    target.setSelectionPath(pathTarget);
    DefaultMutableTreeNode parent_node = (DefaultMutableTreeNode) pathTarget.getLastPathComponent();
    // can be a Thing or an Attribute
    Object parent_ob = parent_node.getUserObject();
    Thing child_thing = (Thing) dragged_node.getUserObject();
    if (DnDConstants.ACTION_MOVE == action || DnDConstants.ACTION_COPY == action) {
        if (parent_ob instanceof ProjectThing) {
            ProjectThing parent_thing = (ProjectThing) parent_ob;
            // check if it's allowed to give to this parent such a child:
            if (!parent_thing.uniquePathExists(child_thing.getType()) && !parent_thing.canHaveAsChild(child_thing)) {
                // Utils.log("Not possible.");
                return false;
            }
            // - the leaf that is going to be dropped into itself or any of its descendants.
            if (parent_node == dragged_node.getParent() || dragged_node.isNodeDescendant(parent_node)) {
                // Utils.log("preventing dragging onto itself or any of the self children.");
                return false;
            } else {
                return true;
            }
        }
    }
    // default:
    return false;
}

Example 9 with TemplateThing

use of ini.trakem2.tree.TemplateThing in project TrakEM2 by trakem2.

the class ProjectThing method createChild.

public ProjectThing createChild(String type) {
    // create the Displayable
    TemplateThing tt = template.getChildTemplate(type);
    if (null == tt) {
        Utils.log2("Can't create a child of type " + type);
        return null;
    }
    Object ob = project.makeObject(tt);
    Layer layer = null;
    if (ob instanceof Displayable) {
        // which layer to add it to? Get it from the front Display
        layer = Display.getFrontLayer(this.project);
        if (null == layer) {
            Utils.showMessage("Open a display first!");
            ((DBObject) ob).removeFromDatabase();
            return null;
        }
    }
    // wrap it in a new ProjectThing
    ProjectThing pt = null;
    try {
        pt = new ProjectThing(tt, project, ob);
    } catch (Exception e) {
        IJError.print(e);
        return null;
    }
    // add it here as child
    addChild(pt);
    // finally, add it to the layer if appropriate
    if (null != layer) {
        if (ob instanceof ZDisplayable) {
            layer.getParent().add((ZDisplayable) ob);
        } else {
            layer.add((Displayable) ob);
        }
    }
    // finally, return it to be added to the ProjectTree as a new node
    return pt;
}

Example 10 with TemplateThing

use of ini.trakem2.tree.TemplateThing in project TrakEM2 by trakem2.

the class ProjectTree method tryAddNewConnector.

/**
 * If the parent node of {@code active} can accept a Connector or has a direct child
 * node that can accept a {@link Connector}, add a new {@link Connector} and return it.
 *
 * @param d The {@link Displayable} that serves as reference, to decide which node to add the new {@link Connector}.
 * @param selectNode Whether to select the new node containing the {@link Connector} in the ProjectTree.
 *
 * @return The newly created {@link Connector}.
 */
public Connector tryAddNewConnector(final Displayable d, final boolean selectNode) {
    ProjectThing pt = project.findProjectThing(d);
    ProjectThing parent = (ProjectThing) pt.getParent();
    TemplateThing connectorType = project.getTemplateThing("connector");
    boolean add = false;
    if (parent.canHaveAsChild(connectorType)) {
        // Add as a sibling of pt
        add = true;
    } else {
        // Inspect if any of the sibling nodes can have it as child
        for (final ProjectThing child : parent.getChildren()) {
            if (child.canHaveAsChild(connectorType)) {
                parent = child;
                add = true;
                break;
            }
        }
    }
    Connector c = null;
    DefaultMutableTreeNode node = null;
    if (add) {
        // reuse same String instance
        c = new Connector(project, connectorType.getType());
        node = addChild(parent, connectorType.getType(), c);
    }
    if (null != node) {
        d.getLayerSet().add(c);
        if (selectNode)
            setSelectionPath(new TreePath(node.getPath()));
        return c;
    }
    Utils.logAll("Could not add a new Connector related to " + d);
    return null;
}