Examples with Filter ini.trakem2.utils.Filter used on opensource projects

Example 31 with Filter

use of ini.trakem2.utils.Filter in project TrakEM2 by trakem2.

the class RegularizedAffineLayerAlignment method exec.

/**
 * Stateful.  Changing the parameters of this instance.  Do not use in parallel.
 *
 * @param layerSet
 * @param firstIn
 * @param lastIn
 * @param ref
 * @param propagateTransformBefore
 * @param propagateTransformAfter
 * @param fov
 * @param filter
 */
public final void exec(final LayerSet layerSet, final int firstIn, final int lastIn, final int ref, final boolean propagateTransformBefore, final boolean propagateTransformAfter, final Rectangle fov, final Filter<Patch> filter) throws Exception {
    final int first = Math.min(firstIn, lastIn);
    final int last = Math.max(firstIn, lastIn);
    /* always first index first despite the method would return inverse order if last > first */
    final List<Layer> layerRange = layerSet.getLayers(first, last);
    final HashSet<Layer> fixedLayers = new HashSet<Layer>();
    if (ref - first >= 0)
        fixedLayers.add(layerRange.get(ref - first));
    Utils.log(layerRange.size() + "");
    exec(layerRange, fixedLayers, propagateTransformBefore, propagateTransformAfter, fov, filter);
}