Examples with InvalidPathException java.nio.file.InvalidPathException used on opensource projects

Example 61 with InvalidPathException

use of java.nio.file.InvalidPathException in project searchcode-server by boyter.

the class IndexGitRepoJob method updateGitRepository.

/**
     * Update a git repository and return if it has changed and the differences
     */
public RepositoryChanged updateGitRepository(String repoName, String repoRemoteLocation, String repoUserName, String repoPassword, String repoLocations, String branch, boolean useCredentials) {
    boolean changed = false;
    List<String> changedFiles = new ArrayList<>();
    List<String> deletedFiles = new ArrayList<>();
    Singleton.getLogger().info("Attempting to pull latest from " + repoRemoteLocation + " for " + repoName);
    Repository localRepository = null;
    Git git = null;
    try {
        localRepository = new FileRepository(new File(repoLocations + "/" + repoName + "/.git"));
        Ref head = localRepository.getRef("HEAD");
        git = new Git(localRepository);
        git.reset();
        git.clean();
        PullCommand pullCmd = git.pull();
        if (useCredentials) {
            pullCmd.setCredentialsProvider(new UsernamePasswordCredentialsProvider(repoUserName, repoPassword));
        }
        pullCmd.call();
        Ref newHEAD = localRepository.getRef("HEAD");
        if (!head.toString().equals(newHEAD.toString())) {
            changed = true;
            // Get the differences between the the heads which we updated at
            // and use these to just update the differences between them
            ObjectId oldHead = localRepository.resolve(head.getObjectId().getName() + "^{tree}");
            ObjectId newHead = localRepository.resolve(newHEAD.getObjectId().getName() + "^{tree}");
            ObjectReader reader = localRepository.newObjectReader();
            CanonicalTreeParser oldTreeIter = new CanonicalTreeParser();
            oldTreeIter.reset(reader, oldHead);
            CanonicalTreeParser newTreeIter = new CanonicalTreeParser();
            newTreeIter.reset(reader, newHead);
            List<DiffEntry> entries = git.diff().setNewTree(newTreeIter).setOldTree(oldTreeIter).call();
            for (DiffEntry entry : entries) {
                if ("DELETE".equals(entry.getChangeType().name())) {
                    deletedFiles.add(FilenameUtils.separatorsToUnix(entry.getOldPath()));
                } else {
                    changedFiles.add(FilenameUtils.separatorsToUnix(entry.getNewPath()));
                }
            }
        }
    } catch (IOException | GitAPIException | InvalidPathException ex) {
        changed = false;
        Singleton.getLogger().warning("ERROR - caught a " + ex.getClass() + " in " + this.getClass() + " updateGitRepository for " + repoName + "\n with message: " + ex.getMessage());
    } finally {
        Singleton.getHelpers().closeQuietly(localRepository);
        Singleton.getHelpers().closeQuietly(git);
    }
    return new RepositoryChanged(changed, changedFiles, deletedFiles);
}

Example 62 with InvalidPathException

use of java.nio.file.InvalidPathException in project searchcode-server by boyter.

the class IndexGitRepoJob method cloneGitRepository.

/**
     * Clones the repository from scratch
     */
public RepositoryChanged cloneGitRepository(String repoName, String repoRemoteLocation, String repoUserName, String repoPassword, String repoLocations, String branch, boolean useCredentials) {
    boolean successful = false;
    Singleton.getLogger().info("Attempting to clone " + repoRemoteLocation);
    Git call = null;
    try {
        CloneCommand cloneCommand = Git.cloneRepository();
        cloneCommand.setURI(repoRemoteLocation);
        cloneCommand.setDirectory(new File(repoLocations + "/" + repoName + "/"));
        cloneCommand.setCloneAllBranches(true);
        cloneCommand.setBranch(branch);
        if (useCredentials) {
            cloneCommand.setCredentialsProvider(new UsernamePasswordCredentialsProvider(repoUserName, repoPassword));
        }
        call = cloneCommand.call();
        successful = true;
    } catch (GitAPIException | InvalidPathException ex) {
        successful = false;
        Singleton.getLogger().warning("ERROR - caught a " + ex.getClass() + " in " + this.getClass() + " cloneGitRepository for " + repoName + "\n with message: " + ex.getMessage());
    } finally {
        Singleton.getHelpers().closeQuietly(call);
    }
    RepositoryChanged repositoryChanged = new RepositoryChanged(successful);
    repositoryChanged.setClone(true);
    return repositoryChanged;
}

Example 63 with InvalidPathException

use of java.nio.file.InvalidPathException in project SpongeCommon by SpongePowered.

the class WorldMigrator method getOldWorldContainer.

/**
 * Gets the old world container used when this server used to be running Bukkit.
 *
 * @return The world container
 */
public static Path getOldWorldContainer() {
    Path worldContainer = Paths.get(".");
    final Path bukkitYml = worldContainer.resolve("bukkit.yml");
    if (Files.exists(bukkitYml)) {
        try {
            final ConfigurationNode node = YAMLConfigurationLoader.builder().setPath(bukkitYml).build().load();
            final String containerCandidate = node.getNode("settings", "world-container").getString("");
            if (!containerCandidate.isEmpty()) {
                try {
                    worldContainer = Paths.get(worldContainer.toString()).resolve(containerCandidate);
                } catch (InvalidPathException ipe) {
                    SpongeImpl.getLogger().warn("Cannot use path [{}] specified under [world-container] in bukkit" + ".yml. Will use [{}] instead.", containerCandidate, worldContainer, ipe);
                }
            }
        } catch (IOException ioe) {
            SpongeImpl.getLogger().warn("Cannot load bukkit.yml. Will use [{}] instead.", worldContainer, ioe);
        }
    }
    return worldContainer;
}

Example 64 with InvalidPathException

use of java.nio.file.InvalidPathException in project EnrichmentMapApp by BaderLab.

the class GSEAResolver method getRptClassFile.

private static Optional<Path> getRptClassFile(Map<String, String> params) {
    String classes = params.get("param cls");
    // Gsea or GseaPreranked
    String method = params.get("producer_class").split("\\p{Punct}")[2];
    if (classes != null && method.equalsIgnoreCase("Gsea")) {
        String[] classes_split = classes.split("#");
        try {
            Path path = Paths.get(classes_split[0]);
            if (Files.exists(path)) {
                return Optional.of(path);
            }
        } catch (InvalidPathException e) {
            e.printStackTrace();
        }
    }
    return Optional.empty();
}

Example 65 with InvalidPathException

use of java.nio.file.InvalidPathException in project knime-core by knime.

the class SearchReplaceDictNodeModel method configure.

/**
 * {@inheritDoc}
 */
@Override
protected DataTableSpec[] configure(final DataTableSpec[] inSpecs) throws InvalidSettingsException {
    if (m_dictFileURLString == null) {
        throw new InvalidSettingsException("No settings available");
    }
    File dictFile = null;
    try {
        dictFile = FileUtil.getFileFromURL(FileUtil.toURL(m_dictFileURLString));
    } catch (InvalidPathException | MalformedURLException e) {
        throw new InvalidSettingsException("Can't get file from '" + m_dictFileURLString + "'.", e);
    }
    if (!dictFile.isFile()) {
        throw new InvalidSettingsException("No file at \"" + m_dictFileURLString + "\"");
    }
    if (!inSpecs[0].containsName(m_targetColumnName)) {
        throw new InvalidSettingsException("No such column \"" + m_targetColumnName + "\" in input table");
    }
    if (m_newColumnName != null && inSpecs[0].containsName(m_newColumnName)) {
        throw new InvalidSettingsException("Column \"" + m_newColumnName + "\" already exists");
    }
    ColumnRearranger result = createColumnRearranger(inSpecs[0]);
    return new DataTableSpec[] { result.createSpec() };
}