Examples with InvalidSettingsException org.knime.core.node.InvalidSettingsException used on opensource projects

Example 1 with InvalidSettingsException

use of org.knime.core.node.InvalidSettingsException in project knime-core by knime.

the class RuleSetToTable method execute.

/**
 * Performs the conversion.
 *
 * @param exec An {@link ExecutionContext}.
 * @param pmmlPo The input {@link PMMLPortObject}.
 * @return The created {@link BufferedDataTable}.
 * @throws CanceledExecutionException Execition was cancelled.
 * @throws InvalidSettingsException No or more than one RuleSet model is in the PMML input.
 */
public BufferedDataTable execute(final ExecutionContext exec, final PMMLPortObject pmmlPo) throws CanceledExecutionException, InvalidSettingsException {
    // TODO should the rule selection method be an output flow variable?
    if (pmmlPo.getPMMLValue().getModels(PMMLModelType.RuleSetModel).size() != 1) {
        throw new InvalidSettingsException("Only a single RuleSet model is supported.");
    }
    PMMLRuleTranslator ruleTranslator = new PMMLRuleTranslator();
    pmmlPo.initializeModelTranslator(ruleTranslator);
    List<Rule> rules = ruleTranslator.getRules();
    final DataTableSpec confSpec = configure(pmmlPo.getSpec());
    final List<String> scoreValues = new ArrayList<>();
    final DataTableSpec properSpec = confSpec != null ? confSpec : properSpec(rules, scoreValues);
    BufferedDataContainer container = exec.createDataContainer(properSpec);
    List<DataColumnSpec> targetCols = pmmlPo.getSpec().getTargetCols();
    DataType outcomeType = targetCols.get(0).getType();
    long idx = 0L;
    int rulesSize = rules.size();
    Map<String, DataType> types = new LinkedHashMap<>();
    for (DataColumnSpec col : pmmlPo.getSpec().getLearningCols()) {
        types.put(col.getName(), col.getType());
    }
    for (Rule rule : rules) {
        exec.checkCanceled();
        exec.setProgress(1.0 * idx++ / rulesSize);
        container.addRowToTable(new DefaultRow(RowKey.createRowKey(idx), createRow(rule, outcomeType, types, scoreValues)));
    }
    container.close();
    return container.getTable();
}

Example 2 with InvalidSettingsException

use of org.knime.core.node.InvalidSettingsException in project knime-core by knime.

the class RuleEngine2PortsNodeModel method autoGuessRuleColumnName.

/**
 * Tries to autoguess the rule column name. In case it fails because of ambiguity it returns a warning message,
 * otherwise it fails with {@link InvalidSettingsException}.
 *
 * @param inSpecs The input specs.
 * @param settings The {@link RuleEngine2PortsSimpleSettings} for the node model.
 * @return The warning message (or {@code null} if everything is fine).
 * @throws InvalidSettingsException Cannot find String-valued column for rules.
 */
static String autoGuessRuleColumnName(final PortObjectSpec[] inSpecs, final RuleEngine2PortsSimpleSettings settings) throws InvalidSettingsException {
    // check spec with selected column
    String ruleColumn = settings.getRuleColumn();
    DataTableSpec ruleSpec = (DataTableSpec) inSpecs[RULE_PORT];
    if (ruleSpec == null) {
        throw new InvalidSettingsException("Rule table specification is not available.");
    }
    DataColumnSpec columnSpec = ruleSpec.getColumnSpec(ruleColumn);
    boolean isValid = columnSpec != null && columnSpec.getType().isCompatible(StringValue.class);
    CheckUtils.checkSetting(ruleColumn == null || isValid, "Rule column \"" + ruleColumn + "\" not found or incompatible");
    if (ruleColumn == null) {
        // auto-guessing
        assert !isValid : "No class column set but valid configuration";
        // get the first useful one starting at the end of the table
        for (int i = ruleSpec.getNumColumns(); i-- > 0; ) {
            if (ruleSpec.getColumnSpec(i).getType().isCompatible(StringValue.class)) {
                settings.setRuleColumn(ruleSpec.getColumnSpec(i).getName());
                return "Guessing target column: \"" + settings.getRuleColumn() + "\".";
            }
        }
        CheckUtils.checkSetting(false, "Rules table contains no String column for rules.");
    }
    return null;
}

Example 3 with InvalidSettingsException

use of org.knime.core.node.InvalidSettingsException in project knime-core by knime.

the class RuleEngine2PortsSimpleNodeDialog method updateErrorsAndWarnings.

/**
 * Updates the errors table, the warning text area and the computed outcome type.
 */
protected void updateErrorsAndWarnings() {
    m_errorsModel.setRowCount(0);
    hideErrors();
    m_warnings.setText("");
    m_outcomeType.setIcon(DataType.getMissingCell().getType().getIcon());
    // Checking data from second input port
    final int ruleIdx = getRules() == null ? -1 : getRules().getSpec().findColumnIndex(m_ruleColumn.getSelectedColumn());
    final int outcomeIdx = getRules() == null ? -1 : getRules().getSpec().findColumnIndex(m_outcomeColumn.getSelectedColumn());
    if (getRules() != null && isSpecAvailable() && ruleIdx >= 0) {
        RuleFactory factory = ruleFactory();
        long lineNo = 0;
        boolean wasCatchAll = false;
        final boolean firstHit = isFirstHit();
        List<Rule> rules = new ArrayList<>();
        for (DataRow dataRow : getRules()) {
            ++lineNo;
            DataCell ruleCell = dataRow.getCell(ruleIdx);
            if (ruleCell.isMissing()) {
                // String cellValue = "?";
                // if (ruleCell instanceof MissingValue) {
                // cellValue += " (" + ((MissingValue)ruleCell).getError() + ")";
                // }
                m_errorsModel.addRow(new Object[] { dataRow.getKey(), ruleCell, "Missing cell" });
                showErrors();
            }
            if (ruleCell instanceof StringValue) {
                StringValue ruleSV = (StringValue) ruleCell;
                String ruleText = ruleSV.getStringValue().replaceAll("[\r\n]+", " ");
                if (outcomeIdx >= 0) {
                    DataCell outcome = dataRow.getCell(outcomeIdx);
                    String outcomeString;
                    try {
                        outcomeString = m_settings.asStringFailForMissing(outcome);
                    } catch (InvalidSettingsException e) {
                        outcomeString = "?";
                    }
                    if (m_ruleType.onlyBooleanOutcome()) {
                        if ("\"TRUE\"".equalsIgnoreCase(outcomeString)) {
                            outcomeString = "TRUE";
                        } else if ("\"FALSE\"".equalsIgnoreCase(outcomeString)) {
                            outcomeString = "FALSE";
                        }
                    }
                    ruleText += " => " + outcomeString;
                }
                try {
                    Rule rule = factory.parse(ruleText, getDataSpec(), getAvailableFlowVariables());
                    rules.add(rule);
                    String origWarning = !m_warnings.getText().isEmpty() ? m_warnings.getText() + "\n" : "";
                    Condition cond = rule.getCondition();
                    if (cond.isEnabled()) {
                        // not comment
                        if (cond.isCatchAll() && !wasCatchAll && firstHit && lineNo < getRules().size()) {
                            m_warnings.setText(origWarning + "No rules will match after line " + lineNo + " (" + dataRow.getKey() + "). Because of rule: " + ruleText);
                        }
                        wasCatchAll |= cond.isCatchAll() && firstHit;
                        if (!wasCatchAll && cond.isConstantFalse()) {
                            m_warnings.setText(origWarning + "The rule in line " + lineNo + " (" + dataRow.getKey() + ") will never match: " + ruleText);
                        }
                    }
                } catch (ParseException e) {
                    m_errorsModel.addRow(new Object[] { dataRow.getKey(), ruleText, e.getMessage() });
                    showErrors();
                }
            } else {
                // Missings were handled previously
                if (!ruleCell.isMissing()) {
                    m_errorsModel.addRow(new Object[] { dataRow.getKey(), ruleCell.toString(), "Wrong type: " + ruleCell.getType() });
                }
            }
        }
        final DataColumnSpec outcomeSpec = m_outcomeColumn.getSelectedColumnAsSpec();
        DataType dataType = RuleEngineNodeModel.computeOutputType(rules, outcomeSpec == null ? StringCell.TYPE : outcomeSpec.getType(), m_ruleType, getSettings().isDisallowLongOutputForCompatibility());
        if (dataType != null) {
            m_outcomeType.setIcon(dataType.getIcon());
        }
    }
}

Example 4 with InvalidSettingsException

use of org.knime.core.node.InvalidSettingsException in project knime-core by knime.

the class RuleEngineFilter2PortsNodeModel method createStreamableOperator.

/**
 * {@inheritDoc}
 */
@Override
public StreamableOperator createStreamableOperator(final PartitionInfo partitionInfo, final PortObjectSpec[] inSpecs) throws InvalidSettingsException {
    return new StreamableOperator() {

        private SimpleStreamableOperatorInternals m_internals;

        /**
         * {@inheritDoc}
         */
        @Override
        public void loadInternals(final StreamableOperatorInternals internals) {
            m_internals = (SimpleStreamableOperatorInternals) internals;
        }

        /**
         * {@inheritDoc}
         */
        @Override
        public void runIntermediate(final PortInput[] inputs, final ExecutionContext exec) throws Exception {
            // count number of rows
            long count = 0;
            RowInput rowInput = (RowInput) inputs[DATA_PORT];
            while (rowInput.poll() != null) {
                count++;
            }
            m_internals.getConfig().addLong(CFG_ROW_COUNT, count);
        }

        /**
         * {@inheritDoc}
         */
        @Override
        public StreamableOperatorInternals saveInternals() {
            return m_internals;
        }

        @Override
        public void runFinal(final PortInput[] inputs, final PortOutput[] outputs, final ExecutionContext exec) throws Exception {
            long rowCount = -1L;
            if (m_internals.getConfig().containsKey(CFG_ROW_COUNT)) {
                rowCount = m_internals.getConfig().getLong(CFG_ROW_COUNT);
            }
            m_rulesList.clear();
            final PortInput rulePort = inputs[RULE_PORT];
            if (rulePort instanceof PortObjectInput) {
                PortObjectInput poRule = (PortObjectInput) rulePort;
                m_rulesList.addAll(RuleEngineVariable2PortsNodeModel.rules((BufferedDataTable) poRule.getPortObject(), m_settings, RuleNodeSettings.RuleFilter));
            } else if (rulePort instanceof RowInput) {
                RowInput riRule = (RowInput) rulePort;
                m_rulesList.addAll(RuleEngineVariable2PortsNodeModel.rules(riRule, m_settings, RuleNodeSettings.RuleFilter));
            }
            final DataTableSpec spec = (DataTableSpec) inSpecs[DATA_PORT];
            try {
                parseRules(spec, RuleNodeSettings.RuleSplitter);
            } catch (final ParseException e) {
                throw new InvalidSettingsException(e);
            }
            final RowInput inputPartitions = (RowInput) inputs[DATA_PORT];
            final List<Rule> rules = parseRules(inputPartitions.getDataTableSpec(), RuleNodeSettings.RuleFilter);
            final RowOutput first = (RowOutput) outputs[0];
            final int nrOutPorts = getNrOutPorts();
            final RowOutput second = nrOutPorts > 1 ? (RowOutput) outputs[1] : new RowOutput() {

                @Override
                public void push(final DataRow row) throws InterruptedException {
                // do nothing
                }

                @Override
                public void close() throws InterruptedException {
                // do nothing
                }
            };
            final RowOutput[] containers = new RowOutput[] { first, second };
            final int matchIndex = m_includeOnMatch ? 0 : 1;
            final int otherIndex = 1 - matchIndex;
            try {
                final MutableLong rowIdx = new MutableLong(0L);
                final long rows = rowCount;
                final VariableProvider provider = new VariableProvider() {

                    @Override
                    public Object readVariable(final String name, final Class<?> type) {
                        return RuleEngineFilter2PortsNodeModel.this.readVariable(name, type);
                    }

                    @Override
                    @Deprecated
                    public int getRowCount() {
                        throw new UnsupportedOperationException();
                    }

                    @Override
                    public long getRowCountLong() {
                        return rows;
                    }

                    @Override
                    @Deprecated
                    public int getRowIndex() {
                        throw new UnsupportedOperationException();
                    }

                    @Override
                    public long getRowIndexLong() {
                        return rowIdx.longValue();
                    }
                };
                DataRow row;
                while ((row = inputPartitions.poll()) != null) {
                    rowIdx.increment();
                    if (rows > 0) {
                        exec.setProgress(rowIdx.longValue() / (double) rows, () -> "Adding row " + rowIdx.longValue() + " of " + rows);
                    } else {
                        exec.setMessage(() -> "Adding row " + rowIdx.longValue() + " of " + rows);
                    }
                    exec.checkCanceled();
                    boolean wasMatch = false;
                    for (Rule r : rules) {
                        if (r.getCondition().matches(row, provider).getOutcome() == MatchState.matchedAndStop) {
                            // r.getSideEffect().perform(row, provider);
                            DataValue value = r.getOutcome().getComputedResult(row, provider);
                            if (value instanceof BooleanValue) {
                                final BooleanValue bv = (BooleanValue) value;
                                containers[bv.getBooleanValue() ? matchIndex : otherIndex].push(row);
                            } else {
                                containers[matchIndex].push(row);
                            }
                            wasMatch = true;
                            break;
                        }
                    }
                    if (!wasMatch) {
                        containers[otherIndex].push(row);
                    }
                }
            } finally {
                try {
                    second.close();
                } finally {
                    first.close();
                }
            }
        }
    };
}

Example 5 with InvalidSettingsException

use of org.knime.core.node.InvalidSettingsException in project knime-core by knime.

the class MovingAverageNodeModel method configure.

/**
 * {@inheritDoc}
 */
@Override
protected DataTableSpec[] configure(final DataTableSpec[] inSpecs) throws InvalidSettingsException {
    DataTableSpec inSpec = inSpecs[0];
    // define column name on which to apply MA
    if ((m_columnNames.getIncludeList().size() == 0) && (m_columnNames.getExcludeList().size() == 0)) {
        // auto-configure
        List<String> autoConfiguredInclList = new ArrayList<String>();
        for (DataColumnSpec colSpec : inSpec) {
            if (colSpec.getType().isCompatible(DoubleValue.class)) {
                autoConfiguredInclList.add(colSpec.getName());
            }
        }
        m_columnNames.setIncludeList(autoConfiguredInclList);
        setWarningMessage("Auto-configure: selected all double columns!");
    }
    if (m_columnNames.getIncludeList().isEmpty()) {
        setWarningMessage("No double columns selected: input will be same as output!");
    }
    // check for the existence of the selected columns
    for (String colName : m_columnNames.getIncludeList()) {
        if (!inSpecs[0].containsName(colName)) {
            throw new InvalidSettingsException("Column \"" + colName + "\" not found in input data!");
        }
    }
    // define moving average window length
    int winLength = m_winLength.getIntValue();
    if (winLength == -1) {
        throw new InvalidSettingsException("Window length is not selected.");
    }
    // define weight function
    String kindOfMAModelString;
    try {
        kindOfMAModelString = m_kindOfMAModel.getStringValue();
    } catch (IllegalArgumentException e) {
        throw new InvalidSettingsException(e.getMessage(), e);
    }
    if (kindOfMAModelString == null) {
        throw new InvalidSettingsException("No weight function selected.");
    } else {
        // create one MA-compute engine per column (overkill, I know
        // but much easier to reference later on in our DataCellFactory)
        MA_METHODS method = MA_METHODS.getPolicy4Label(kindOfMAModelString);
        if (MA_METHODS.getCenteredMethods().contains(method) && winLength % 2 == 0) {
            throw new InvalidSettingsException("For centered methods, the window size has to be uneven");
        }
        m_mas = new MovingAverage[inSpecs[0].getNumColumns()];
        for (int i = 0; i < inSpecs[0].getNumColumns(); i++) {
            m_mas[i] = method.getMAObject(winLength);
        }
    }
    ColumnRearranger c = createColRearranger(inSpecs[0]);
    return new DataTableSpec[] { c.createSpec() };
}